miRNA display CGI


Results 41 - 60 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13980 3' -64.3 NC_003521.1 + 218695 0.66 0.647464
Target:  5'- --cGGCgGCGaaggcggaggagaCGGCGGcGGCGGcgGGCg -3'
miRNA:   3'- uaaCCGgCGC-------------GCCGCC-CUGCCa-CCGg -5'
13980 3' -64.3 NC_003521.1 + 127369 0.66 0.645581
Target:  5'- -gUGG-UGCGCGGCaggugcgugaugaaGGGcggccacagGCGGUGGUCg -3'
miRNA:   3'- uaACCgGCGCGCCG--------------CCC---------UGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 128396 0.66 0.638989
Target:  5'- --gGGCCGCcUGaGCGGGcguCGGUccgaaaggcGGCCg -3'
miRNA:   3'- uaaCCGGCGcGC-CGCCCu--GCCA---------CCGG- -5'
13980 3' -64.3 NC_003521.1 + 98250 0.66 0.638989
Target:  5'- --gGGCgGCcaCGGCGGGcACGGcGaGCCu -3'
miRNA:   3'- uaaCCGgCGc-GCCGCCC-UGCCaC-CGG- -5'
13980 3' -64.3 NC_003521.1 + 123717 0.66 0.638989
Target:  5'- --cGGCUGaGCGGCGGa--GGcGGCCu -3'
miRNA:   3'- uaaCCGGCgCGCCGCCcugCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 221811 0.66 0.638989
Target:  5'- --gGGCUcCGuCGGCGGGGCGGgcguGUCu -3'
miRNA:   3'- uaaCCGGcGC-GCCGCCCUGCCac--CGG- -5'
13980 3' -64.3 NC_003521.1 + 184164 0.66 0.638989
Target:  5'- -cUGG-UGCGCGaGCGGGA-GGUgcaccGGCCc -3'
miRNA:   3'- uaACCgGCGCGC-CGCCCUgCCA-----CCGG- -5'
13980 3' -64.3 NC_003521.1 + 46552 0.66 0.638047
Target:  5'- --gGGCCuCGCGcCGGGugcugaaGCGGUGGUUg -3'
miRNA:   3'- uaaCCGGcGCGCcGCCC-------UGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 170390 0.66 0.629568
Target:  5'- -cUGcuuCCaCGCGGUuucGGcGACGGUGGCCu -3'
miRNA:   3'- uaACc--GGcGCGCCG---CC-CUGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 221360 0.66 0.629568
Target:  5'- -cUGGCCGCGCaGCGacAUGGUcccGCCg -3'
miRNA:   3'- uaACCGGCGCGcCGCccUGCCAc--CGG- -5'
13980 3' -64.3 NC_003521.1 + 95148 0.66 0.629568
Target:  5'- --cGGCCGCGCcgacGGCaaGGAguCGGccGGCCg -3'
miRNA:   3'- uaaCCGGCGCG----CCGc-CCU--GCCa-CCGG- -5'
13980 3' -64.3 NC_003521.1 + 150618 0.66 0.629568
Target:  5'- --gGGCUGuUGCGGCGGcugcugcgcaGGCGGgGGCg -3'
miRNA:   3'- uaaCCGGC-GCGCCGCC----------CUGCCaCCGg -5'
13980 3' -64.3 NC_003521.1 + 86701 0.66 0.629568
Target:  5'- --gGGCCGCgGCGGCGacgacgaGGCGGUGaUCg -3'
miRNA:   3'- uaaCCGGCG-CGCCGCc------CUGCCACcGG- -5'
13980 3' -64.3 NC_003521.1 + 74228 0.66 0.629568
Target:  5'- --aGGCCGU-CGGCGccguGACGGUGGaCg -3'
miRNA:   3'- uaaCCGGCGcGCCGCc---CUGCCACCgG- -5'
13980 3' -64.3 NC_003521.1 + 198208 0.66 0.629568
Target:  5'- -aUGGCgGCGaCGGCGccgcCGGcGGCCg -3'
miRNA:   3'- uaACCGgCGC-GCCGCccu-GCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 116465 0.66 0.629568
Target:  5'- --cGGCCGU--GGUGGGACacGUGGCg -3'
miRNA:   3'- uaaCCGGCGcgCCGCCCUGc-CACCGg -5'
13980 3' -64.3 NC_003521.1 + 135752 0.66 0.628626
Target:  5'- -gUGGUgGCgGCGGUGGGAucgccccUGG-GGCUg -3'
miRNA:   3'- uaACCGgCG-CGCCGCCCU-------GCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 223925 0.67 0.620149
Target:  5'- gAUUGGagGCGCGGCcgagGGGGucgaGGcGGCCg -3'
miRNA:   3'- -UAACCggCGCGCCG----CCCUg---CCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 18094 0.67 0.620149
Target:  5'- --cGGCCGCGgGGaCGGaGgagguaGCGGUGGa- -3'
miRNA:   3'- uaaCCGGCGCgCC-GCC-C------UGCCACCgg -5'
13980 3' -64.3 NC_003521.1 + 125096 0.67 0.620149
Target:  5'- --aGGUgcagGCGCuGCGGGAUGGgcaccacGGCCg -3'
miRNA:   3'- uaaCCGg---CGCGcCGCCCUGCCa------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.