miRNA display CGI


Results 21 - 40 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13980 3' -64.3 NC_003521.1 + 109852 0.66 0.667199
Target:  5'- --cGGCCcgacaacgacGUGacgGGCGGcGGCGG-GGCCa -3'
miRNA:   3'- uaaCCGG----------CGCg--CCGCC-CUGCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 185214 0.66 0.664384
Target:  5'- --gGGCCGCGCGGgacugcguguacgaCGaGGAgaCGGUguGGUCg -3'
miRNA:   3'- uaaCCGGCGCGCC--------------GC-CCU--GCCA--CCGG- -5'
13980 3' -64.3 NC_003521.1 + 120941 0.66 0.661568
Target:  5'- --cGGCgGCuccggcgaggggcagGgGGCGGGGCGGUuugcGGUCc -3'
miRNA:   3'- uaaCCGgCG---------------CgCCGCCCUGCCA----CCGG- -5'
13980 3' -64.3 NC_003521.1 + 19962 0.66 0.657811
Target:  5'- -gUGGCCGgGCuGGCGGuGAUcGUGaCCu -3'
miRNA:   3'- uaACCGGCgCG-CCGCC-CUGcCACcGG- -5'
13980 3' -64.3 NC_003521.1 + 204703 0.66 0.657811
Target:  5'- --gGGCaGCGaggugaccaccaCGGCGGGGagGGUGGCg -3'
miRNA:   3'- uaaCCGgCGC------------GCCGCCCUg-CCACCGg -5'
13980 3' -64.3 NC_003521.1 + 17356 0.66 0.657811
Target:  5'- --gGGCCGUGaCGcCGGcGCGGcGGCCc -3'
miRNA:   3'- uaaCCGGCGC-GCcGCCcUGCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 138820 0.66 0.657811
Target:  5'- -aUGGCgCGCcugaugGCGGCGGcuACGGccugcGGCCa -3'
miRNA:   3'- uaACCG-GCG------CGCCGCCc-UGCCa----CCGG- -5'
13980 3' -64.3 NC_003521.1 + 74587 0.66 0.657811
Target:  5'- --cGGCgGCGCGGCGucccgcGGcCGGcGcGCCu -3'
miRNA:   3'- uaaCCGgCGCGCCGC------CCuGCCaC-CGG- -5'
13980 3' -64.3 NC_003521.1 + 27515 0.66 0.657811
Target:  5'- --gGGgCGUGCGGCccgaGGcgcccACGGUGGCg -3'
miRNA:   3'- uaaCCgGCGCGCCGc---CC-----UGCCACCGg -5'
13980 3' -64.3 NC_003521.1 + 88047 0.66 0.657811
Target:  5'- cGUUGaG-CGCGCGGaUGaGGucGCGGUGGUCg -3'
miRNA:   3'- -UAAC-CgGCGCGCC-GC-CC--UGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 73566 0.66 0.657811
Target:  5'- -cUGGCCGUG-GuGCGGG-CGcUGGUCa -3'
miRNA:   3'- uaACCGGCGCgC-CGCCCuGCcACCGG- -5'
13980 3' -64.3 NC_003521.1 + 32108 0.66 0.656871
Target:  5'- uUUGGCgGCGCGGCugaucucGGGcagguagcgggcGCGGUGcaCCa -3'
miRNA:   3'- uAACCGgCGCGCCG-------CCC------------UGCCACc-GG- -5'
13980 3' -64.3 NC_003521.1 + 36592 0.66 0.648405
Target:  5'- -cUGGCCuG-GCGGCGGG----UGGCCg -3'
miRNA:   3'- uaACCGG-CgCGCCGCCCugccACCGG- -5'
13980 3' -64.3 NC_003521.1 + 129295 0.66 0.648405
Target:  5'- --cGGCgGUacuuuuugagcgGCGGCGGGAagaGGUcGCCc -3'
miRNA:   3'- uaaCCGgCG------------CGCCGCCCUg--CCAcCGG- -5'
13980 3' -64.3 NC_003521.1 + 13849 0.66 0.648405
Target:  5'- uUUGGCUcgGCGCGG-GGGucucuGCGGgcgGcGCCg -3'
miRNA:   3'- uAACCGG--CGCGCCgCCC-----UGCCa--C-CGG- -5'
13980 3' -64.3 NC_003521.1 + 138696 0.66 0.648405
Target:  5'- --aGGCCGUGagccugGGCGGcACGGgcgcUGGCUg -3'
miRNA:   3'- uaaCCGGCGCg-----CCGCCcUGCC----ACCGG- -5'
13980 3' -64.3 NC_003521.1 + 181450 0.66 0.648405
Target:  5'- --aGuGCUGCGCGGCGuccaGCGGcUGGCg -3'
miRNA:   3'- uaaC-CGGCGCGCCGCcc--UGCC-ACCGg -5'
13980 3' -64.3 NC_003521.1 + 145864 0.66 0.648405
Target:  5'- --gGGcCCG-GCGGCGGG-CGGc-GCCg -3'
miRNA:   3'- uaaCC-GGCgCGCCGCCCuGCCacCGG- -5'
13980 3' -64.3 NC_003521.1 + 77711 0.66 0.648405
Target:  5'- -gUGGCgGCGuuGuUGGcGACGGcGGCCu -3'
miRNA:   3'- uaACCGgCGCgcC-GCC-CUGCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 46389 0.66 0.648405
Target:  5'- --gGGgCGCGgGGUgcguGGGGCGcGcgGGCCa -3'
miRNA:   3'- uaaCCgGCGCgCCG----CCCUGC-Ca-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.