miRNA display CGI


Results 21 - 40 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13980 3' -64.3 NC_003521.1 + 168994 0.75 0.225528
Target:  5'- --cGGUCGCGggaGGCGGGcgACGG-GGCCg -3'
miRNA:   3'- uaaCCGGCGCg--CCGCCC--UGCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 187456 0.74 0.244953
Target:  5'- -gUGcGCCGCGuCaGCGGGACGGUgcugcacaucggcuGGCCc -3'
miRNA:   3'- uaAC-CGGCGC-GcCGCCCUGCCA--------------CCGG- -5'
13980 3' -64.3 NC_003521.1 + 123560 0.74 0.257715
Target:  5'- --cGGCCGaCGaCGGCGGuGGCGGgaUGGCg -3'
miRNA:   3'- uaaCCGGC-GC-GCCGCC-CUGCC--ACCGg -5'
13980 3' -64.3 NC_003521.1 + 115434 0.74 0.263431
Target:  5'- ---cGCgGCGCGGgGGuGACGGUGGUUg -3'
miRNA:   3'- uaacCGgCGCGCCgCC-CUGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 24459 0.73 0.26925
Target:  5'- --aGGuCCGCGCGGaccaCGGGccucacacccuCGGUGGCCa -3'
miRNA:   3'- uaaCC-GGCGCGCC----GCCCu----------GCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 43473 0.73 0.275173
Target:  5'- --gGGCCaGCGCGGCGGccgugcuggccGCGGcGGCCa -3'
miRNA:   3'- uaaCCGG-CGCGCCGCCc----------UGCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 131088 0.73 0.275173
Target:  5'- --cGGCuCGCGCgggcuccggacGGCGGGGCGGcgcGGCUg -3'
miRNA:   3'- uaaCCG-GCGCG-----------CCGCCCUGCCa--CCGG- -5'
13980 3' -64.3 NC_003521.1 + 196713 0.73 0.275173
Target:  5'- --cGGCCGacuucacCGGCGGcGACGGUGGUg -3'
miRNA:   3'- uaaCCGGCgc-----GCCGCC-CUGCCACCGg -5'
13980 3' -64.3 NC_003521.1 + 168435 0.73 0.280591
Target:  5'- --gGGCCGCgGCGGCGGGcgugaagaGCgugauggggcgcuGGUGGCUg -3'
miRNA:   3'- uaaCCGGCG-CGCCGCCC--------UG-------------CCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 92018 0.73 0.287328
Target:  5'- --aGGCgCG-GCGGCGGcGGCGGUGGguCCg -3'
miRNA:   3'- uaaCCG-GCgCGCCGCC-CUGCCACC--GG- -5'
13980 3' -64.3 NC_003521.1 + 186619 0.73 0.293563
Target:  5'- --gGGCUaCGCGGCGGcGGUGGUGGCg -3'
miRNA:   3'- uaaCCGGcGCGCCGCC-CUGCCACCGg -5'
13980 3' -64.3 NC_003521.1 + 192229 0.73 0.293563
Target:  5'- cUUGcGaCCcgGCGCcGCGGGAgGGUGGCCg -3'
miRNA:   3'- uAAC-C-GG--CGCGcCGCCCUgCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 91642 0.73 0.29799
Target:  5'- -gUGGCCGCcgGUGGCGacgcgcgccgagacGGACgacgaGGUGGCCa -3'
miRNA:   3'- uaACCGGCG--CGCCGC--------------CCUG-----CCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 195183 0.73 0.299903
Target:  5'- --cGGaCCcCGCGGagcCGGcGGCGGUGGCCg -3'
miRNA:   3'- uaaCC-GGcGCGCC---GCC-CUGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 166639 0.72 0.312899
Target:  5'- --gGGCCGCGCGcCGGGcgccGCGGcgcagcGGCCa -3'
miRNA:   3'- uaaCCGGCGCGCcGCCC----UGCCa-----CCGG- -5'
13980 3' -64.3 NC_003521.1 + 178277 0.72 0.312899
Target:  5'- ---cGCgCGCGCGaacgaGCGGGACGGguucGGCCa -3'
miRNA:   3'- uaacCG-GCGCGC-----CGCCCUGCCa---CCGG- -5'
13980 3' -64.3 NC_003521.1 + 240622 0.72 0.319555
Target:  5'- --cGGCggCGUGCGGCGGGcCGGccGGUCg -3'
miRNA:   3'- uaaCCG--GCGCGCCGCCCuGCCa-CCGG- -5'
13980 3' -64.3 NC_003521.1 + 73 0.72 0.319555
Target:  5'- --cGGCggCGUGCGGCGGGcCGGccGGUCg -3'
miRNA:   3'- uaaCCG--GCGCGCCGCCCuGCCa-CCGG- -5'
13980 3' -64.3 NC_003521.1 + 200301 0.72 0.319555
Target:  5'- --cGGCggCGUGCGGCGGGcCGGccGGUCg -3'
miRNA:   3'- uaaCCG--GCGCGCCGCCCuGCCa-CCGG- -5'
13980 3' -64.3 NC_003521.1 + 238462 0.72 0.326317
Target:  5'- --cGGCCucgGCG-GGCGGGGCGGagacgcGGCCc -3'
miRNA:   3'- uaaCCGG---CGCgCCGCCCUGCCa-----CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.