miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13980 3' -64.3 NC_003521.1 + 204890 1.09 0.000867
Target:  5'- gAUUGGCCGCGCGGCGGGACGGUGGCCg -3'
miRNA:   3'- -UAACCGGCGCGCCGCCCUGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 209083 0.84 0.053494
Target:  5'- --cGGUCGagGCGGCGGaGGCGGUGGCCg -3'
miRNA:   3'- uaaCCGGCg-CGCCGCC-CUGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 39525 0.79 0.109115
Target:  5'- --gGGUCGCGCGGCGagagcuggcgcaGGuCGGUGGCCc -3'
miRNA:   3'- uaaCCGGCGCGCCGC------------CCuGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 239752 0.79 0.109115
Target:  5'- --gGGUCGCGCGGCGagagcuggcgcaGGuCGGUGGCCc -3'
miRNA:   3'- uaaCCGGCGCGCCGC------------CCuGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 209555 0.79 0.111781
Target:  5'- --cGGCgGgGUGGCGGcGACGGUGGCg -3'
miRNA:   3'- uaaCCGgCgCGCCGCC-CUGCCACCGg -5'
13980 3' -64.3 NC_003521.1 + 148432 0.79 0.120149
Target:  5'- --cGGCCGCGcCGGCGGcuccaGgGGUGGCCg -3'
miRNA:   3'- uaaCCGGCGC-GCCGCCc----UgCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 168540 0.77 0.156043
Target:  5'- --cGGCCaGCGCGGCGGcGGCGcUGGCg -3'
miRNA:   3'- uaaCCGG-CGCGCCGCC-CUGCcACCGg -5'
13980 3' -64.3 NC_003521.1 + 131047 0.77 0.163534
Target:  5'- --gGGCgGCgGCGGCGGGccucuggacGCGGUGGCg -3'
miRNA:   3'- uaaCCGgCG-CGCCGCCC---------UGCCACCGg -5'
13980 3' -64.3 NC_003521.1 + 167721 0.77 0.1674
Target:  5'- -gUGGCCacgguggauuGCGUGGCGcuGCGGUGGCCg -3'
miRNA:   3'- uaACCGG----------CGCGCCGCccUGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 101756 0.77 0.1674
Target:  5'- --aGGUCGUGCGGC-GGAUGGUGGUg -3'
miRNA:   3'- uaaCCGGCGCGCCGcCCUGCCACCGg -5'
13980 3' -64.3 NC_003521.1 + 14752 0.76 0.183268
Target:  5'- --gGGCCGgcCGCGGcCGGGGCGcgccuucGUGGCCg -3'
miRNA:   3'- uaaCCGGC--GCGCC-GCCCUGC-------CACCGG- -5'
13980 3' -64.3 NC_003521.1 + 145893 0.75 0.205545
Target:  5'- --aGGCCGCcgGCGGCGGGagcagcgGCGGUucgcaaacGGCCu -3'
miRNA:   3'- uaaCCGGCG--CGCCGCCC-------UGCCA--------CCGG- -5'
13980 3' -64.3 NC_003521.1 + 160326 0.75 0.206014
Target:  5'- --gGaGCCGUG-GGCGGcGCGGUGGCCu -3'
miRNA:   3'- uaaC-CGGCGCgCCGCCcUGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 60690 0.75 0.206014
Target:  5'- --cGGCCGCGCGG-GGGAccCGGgGGCg -3'
miRNA:   3'- uaaCCGGCGCGCCgCCCU--GCCaCCGg -5'
13980 3' -64.3 NC_003521.1 + 207909 0.75 0.214123
Target:  5'- --cGGCCGCcaccuacgccggggGCGGCGGGcACGGcGGCa -3'
miRNA:   3'- uaaCCGGCG--------------CGCCGCCC-UGCCaCCGg -5'
13980 3' -64.3 NC_003521.1 + 222000 0.75 0.215582
Target:  5'- --gGGCaUGUGCGGCGuGGGCGGgaagcacuUGGCCa -3'
miRNA:   3'- uaaCCG-GCGCGCCGC-CCUGCC--------ACCGG- -5'
13980 3' -64.3 NC_003521.1 + 98478 0.75 0.220507
Target:  5'- --cGGCCGCgGCGGCcGuGGCGGcGGCCu -3'
miRNA:   3'- uaaCCGGCG-CGCCGcC-CUGCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 18721 0.75 0.220507
Target:  5'- -gUGGCUGCcgcugGCGGCGGcgaucguggcGGCGGUGGCg -3'
miRNA:   3'- uaACCGGCG-----CGCCGCC----------CUGCCACCGg -5'
13980 3' -64.3 NC_003521.1 + 23098 0.75 0.225528
Target:  5'- -gUGGCCGgGCGGgGGGcCGGgacGGCa -3'
miRNA:   3'- uaACCGGCgCGCCgCCCuGCCa--CCGg -5'
13980 3' -64.3 NC_003521.1 + 168994 0.75 0.225528
Target:  5'- --cGGUCGCGggaGGCGGGcgACGG-GGCCg -3'
miRNA:   3'- uaaCCGGCGCg--CCGCCC--UGCCaCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.