Results 1 - 20 of 241 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13980 | 3' | -64.3 | NC_003521.1 | + | 200301 | 0.72 | 0.319555 |
Target: 5'- --cGGCggCGUGCGGCGGGcCGGccGGUCg -3' miRNA: 3'- uaaCCG--GCGCGCCGCCCuGCCa-CCGG- -5' |
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13980 | 3' | -64.3 | NC_003521.1 | + | 24459 | 0.73 | 0.26925 |
Target: 5'- --aGGuCCGCGCGGaccaCGGGccucacacccuCGGUGGCCa -3' miRNA: 3'- uaaCC-GGCGCGCC----GCCCu----------GCCACCGG- -5' |
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13980 | 3' | -64.3 | NC_003521.1 | + | 43473 | 0.73 | 0.275173 |
Target: 5'- --gGGCCaGCGCGGCGGccgugcuggccGCGGcGGCCa -3' miRNA: 3'- uaaCCGG-CGCGCCGCCc----------UGCCaCCGG- -5' |
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13980 | 3' | -64.3 | NC_003521.1 | + | 131088 | 0.73 | 0.275173 |
Target: 5'- --cGGCuCGCGCgggcuccggacGGCGGGGCGGcgcGGCUg -3' miRNA: 3'- uaaCCG-GCGCG-----------CCGCCCUGCCa--CCGG- -5' |
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13980 | 3' | -64.3 | NC_003521.1 | + | 196713 | 0.73 | 0.275173 |
Target: 5'- --cGGCCGacuucacCGGCGGcGACGGUGGUg -3' miRNA: 3'- uaaCCGGCgc-----GCCGCC-CUGCCACCGg -5' |
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13980 | 3' | -64.3 | NC_003521.1 | + | 168435 | 0.73 | 0.280591 |
Target: 5'- --gGGCCGCgGCGGCGGGcgugaagaGCgugauggggcgcuGGUGGCUg -3' miRNA: 3'- uaaCCGGCG-CGCCGCCC--------UG-------------CCACCGG- -5' |
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13980 | 3' | -64.3 | NC_003521.1 | + | 92018 | 0.73 | 0.287328 |
Target: 5'- --aGGCgCG-GCGGCGGcGGCGGUGGguCCg -3' miRNA: 3'- uaaCCG-GCgCGCCGCC-CUGCCACC--GG- -5' |
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13980 | 3' | -64.3 | NC_003521.1 | + | 192229 | 0.73 | 0.293563 |
Target: 5'- cUUGcGaCCcgGCGCcGCGGGAgGGUGGCCg -3' miRNA: 3'- uAAC-C-GG--CGCGcCGCCCUgCCACCGG- -5' |
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13980 | 3' | -64.3 | NC_003521.1 | + | 178277 | 0.72 | 0.312899 |
Target: 5'- ---cGCgCGCGCGaacgaGCGGGACGGguucGGCCa -3' miRNA: 3'- uaacCG-GCGCGC-----CGCCCUGCCa---CCGG- -5' |
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13980 | 3' | -64.3 | NC_003521.1 | + | 115434 | 0.74 | 0.263431 |
Target: 5'- ---cGCgGCGCGGgGGuGACGGUGGUUg -3' miRNA: 3'- uaacCGgCGCGCCgCC-CUGCCACCGG- -5' |
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13980 | 3' | -64.3 | NC_003521.1 | + | 168994 | 0.75 | 0.225528 |
Target: 5'- --cGGUCGCGggaGGCGGGcgACGG-GGCCg -3' miRNA: 3'- uaaCCGGCGCg--CCGCCC--UGCCaCCGG- -5' |
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13980 | 3' | -64.3 | NC_003521.1 | + | 18721 | 0.75 | 0.220507 |
Target: 5'- -gUGGCUGCcgcugGCGGCGGcgaucguggcGGCGGUGGCg -3' miRNA: 3'- uaACCGGCG-----CGCCGCC----------CUGCCACCGg -5' |
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13980 | 3' | -64.3 | NC_003521.1 | + | 209555 | 0.79 | 0.111781 |
Target: 5'- --cGGCgGgGUGGCGGcGACGGUGGCg -3' miRNA: 3'- uaaCCGgCgCGCCGCC-CUGCCACCGg -5' |
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13980 | 3' | -64.3 | NC_003521.1 | + | 148432 | 0.79 | 0.120149 |
Target: 5'- --cGGCCGCGcCGGCGGcuccaGgGGUGGCCg -3' miRNA: 3'- uaaCCGGCGC-GCCGCCc----UgCCACCGG- -5' |
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13980 | 3' | -64.3 | NC_003521.1 | + | 168540 | 0.77 | 0.156043 |
Target: 5'- --cGGCCaGCGCGGCGGcGGCGcUGGCg -3' miRNA: 3'- uaaCCGG-CGCGCCGCC-CUGCcACCGg -5' |
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13980 | 3' | -64.3 | NC_003521.1 | + | 131047 | 0.77 | 0.163534 |
Target: 5'- --gGGCgGCgGCGGCGGGccucuggacGCGGUGGCg -3' miRNA: 3'- uaaCCGgCG-CGCCGCCC---------UGCCACCGg -5' |
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13980 | 3' | -64.3 | NC_003521.1 | + | 101756 | 0.77 | 0.1674 |
Target: 5'- --aGGUCGUGCGGC-GGAUGGUGGUg -3' miRNA: 3'- uaaCCGGCGCGCCGcCCUGCCACCGg -5' |
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13980 | 3' | -64.3 | NC_003521.1 | + | 145893 | 0.75 | 0.205545 |
Target: 5'- --aGGCCGCcgGCGGCGGGagcagcgGCGGUucgcaaacGGCCu -3' miRNA: 3'- uaaCCGGCG--CGCCGCCC-------UGCCA--------CCGG- -5' |
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13980 | 3' | -64.3 | NC_003521.1 | + | 60690 | 0.75 | 0.206014 |
Target: 5'- --cGGCCGCGCGG-GGGAccCGGgGGCg -3' miRNA: 3'- uaaCCGGCGCGCCgCCCU--GCCaCCGg -5' |
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13980 | 3' | -64.3 | NC_003521.1 | + | 222000 | 0.75 | 0.215582 |
Target: 5'- --gGGCaUGUGCGGCGuGGGCGGgaagcacuUGGCCa -3' miRNA: 3'- uaaCCG-GCGCGCCGC-CCUGCC--------ACCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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