miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13980 3' -64.3 NC_003521.1 + 73 0.72 0.319555
Target:  5'- --cGGCggCGUGCGGCGGGcCGGccGGUCg -3'
miRNA:   3'- uaaCCG--GCGCGCCGCCCuGCCa-CCGG- -5'
13980 3' -64.3 NC_003521.1 + 5542 0.7 0.426908
Target:  5'- aGUUGGCgGCGCGucguuccucccgguuGCGGGcucgGCGGUGGa- -3'
miRNA:   3'- -UAACCGgCGCGC---------------CGCCC----UGCCACCgg -5'
13980 3' -64.3 NC_003521.1 + 6392 0.67 0.581674
Target:  5'- --gGcGCCGCagcuaccGCGGCGGcGACGGgucuuGCCg -3'
miRNA:   3'- uaaC-CGGCG-------CGCCGCC-CUGCCac---CGG- -5'
13980 3' -64.3 NC_003521.1 + 7656 0.71 0.39188
Target:  5'- --cGGCCGCcacgGCGGCGcGGacaGCGGUGcCCa -3'
miRNA:   3'- uaaCCGGCG----CGCCGC-CC---UGCCACcGG- -5'
13980 3' -64.3 NC_003521.1 + 7740 0.7 0.399675
Target:  5'- --cGGCgCGaGCGGCGGaGGCGGcGGCa -3'
miRNA:   3'- uaaCCG-GCgCGCCGCC-CUGCCaCCGg -5'
13980 3' -64.3 NC_003521.1 + 7983 0.68 0.508379
Target:  5'- --gGGuCCGCgGCGGCGGGGgagguacCGG-GGCa -3'
miRNA:   3'- uaaCC-GGCG-CGCCGCCCU-------GCCaCCGg -5'
13980 3' -64.3 NC_003521.1 + 10488 0.68 0.554748
Target:  5'- --cGGagcaUGCGcCGGCgGGGAUGGcgUGGCCc -3'
miRNA:   3'- uaaCCg---GCGC-GCCG-CCCUGCC--ACCGG- -5'
13980 3' -64.3 NC_003521.1 + 12918 0.68 0.545545
Target:  5'- -cUGG-CGCugGUGGCGGGACcagGGCCg -3'
miRNA:   3'- uaACCgGCG--CGCCGCCCUGccaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 13650 0.66 0.6803
Target:  5'- --gGGCgGCGgaGGCGGGagaagaggcucggagAgGGUGGCg -3'
miRNA:   3'- uaaCCGgCGCg-CCGCCC---------------UgCCACCGg -5'
13980 3' -64.3 NC_003521.1 + 13849 0.66 0.648405
Target:  5'- uUUGGCUcgGCGCGG-GGGucucuGCGGgcgGcGCCg -3'
miRNA:   3'- uAACCGG--CGCGCCgCCC-----UGCCa--C-CGG- -5'
13980 3' -64.3 NC_003521.1 + 13902 0.7 0.407569
Target:  5'- --gGGCCcgGCGCGGaggGGGccGCGGaGGCCg -3'
miRNA:   3'- uaaCCGG--CGCGCCg--CCC--UGCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 14752 0.76 0.183268
Target:  5'- --gGGCCGgcCGCGGcCGGGGCGcgccuucGUGGCCg -3'
miRNA:   3'- uaaCCGGC--GCGCC-GCCCUGC-------CACCGG- -5'
13980 3' -64.3 NC_003521.1 + 17004 0.67 0.563996
Target:  5'- --aGGCgCcCGCGGUGGcGGCGGcgcaGGCCc -3'
miRNA:   3'- uaaCCG-GcGCGCCGCC-CUGCCa---CCGG- -5'
13980 3' -64.3 NC_003521.1 + 17356 0.66 0.657811
Target:  5'- --gGGCCGUGaCGcCGGcGCGGcGGCCc -3'
miRNA:   3'- uaaCCGGCGC-GCcGCCcUGCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 17764 0.68 0.508379
Target:  5'- -cUGGCCGUaccgccgGCGGC-GGACGGUcaGGUg -3'
miRNA:   3'- uaACCGGCG-------CGCCGcCCUGCCA--CCGg -5'
13980 3' -64.3 NC_003521.1 + 18094 0.67 0.620149
Target:  5'- --cGGCCGCGgGGaCGGaGgagguaGCGGUGGa- -3'
miRNA:   3'- uaaCCGGCGCgCC-GCC-C------UGCCACCgg -5'
13980 3' -64.3 NC_003521.1 + 18721 0.75 0.220507
Target:  5'- -gUGGCUGCcgcugGCGGCGGcgaucguggcGGCGGUGGCg -3'
miRNA:   3'- uaACCGGCG-----CGCCGCC----------CUGCCACCGg -5'
13980 3' -64.3 NC_003521.1 + 19475 0.7 0.431827
Target:  5'- ---cGCUGCGCGGCcaGGuGCaGGUGGCCc -3'
miRNA:   3'- uaacCGGCGCGCCG--CCcUG-CCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 19732 0.67 0.60134
Target:  5'- -cUGaCCaGCGUGGCGGuGACGGcgucgGGCUu -3'
miRNA:   3'- uaACcGG-CGCGCCGCC-CUGCCa----CCGG- -5'
13980 3' -64.3 NC_003521.1 + 19962 0.66 0.657811
Target:  5'- -gUGGCCGgGCuGGCGGuGAUcGUGaCCu -3'
miRNA:   3'- uaACCGGCgCG-CCGCC-CUGcCACcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.