miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13980 3' -64.3 NC_003521.1 + 150618 0.66 0.629568
Target:  5'- --gGGCUGuUGCGGCGGcugcugcgcaGGCGGgGGCg -3'
miRNA:   3'- uaaCCGGC-GCGCCGCC----------CUGCCaCCGg -5'
13980 3' -64.3 NC_003521.1 + 221811 0.66 0.638989
Target:  5'- --gGGCUcCGuCGGCGGGGCGGgcguGUCu -3'
miRNA:   3'- uaaCCGGcGC-GCCGCCCUGCCac--CGG- -5'
13980 3' -64.3 NC_003521.1 + 40872 0.66 0.667199
Target:  5'- -gUGaGCCGCGgaGGgaagggacCGGGGCGGgGGUCa -3'
miRNA:   3'- uaAC-CGGCGCg-CC--------GCCCUGCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 46552 0.66 0.638047
Target:  5'- --gGGCCuCGCGcCGGGugcugaaGCGGUGGUUg -3'
miRNA:   3'- uaaCCGGcGCGCcGCCC-------UGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 95148 0.66 0.629568
Target:  5'- --cGGCCGCGCcgacGGCaaGGAguCGGccGGCCg -3'
miRNA:   3'- uaaCCGGCGCG----CCGc-CCU--GCCa-CCGG- -5'
13980 3' -64.3 NC_003521.1 + 221360 0.66 0.629568
Target:  5'- -cUGGCCGCGCaGCGacAUGGUcccGCCg -3'
miRNA:   3'- uaACCGGCGCGcCGCccUGCCAc--CGG- -5'
13980 3' -64.3 NC_003521.1 + 218695 0.66 0.647464
Target:  5'- --cGGCgGCGaaggcggaggagaCGGCGGcGGCGGcgGGCg -3'
miRNA:   3'- uaaCCGgCGC-------------GCCGCC-CUGCCa-CCGg -5'
13980 3' -64.3 NC_003521.1 + 127369 0.66 0.645581
Target:  5'- -gUGG-UGCGCGGCaggugcgugaugaaGGGcggccacagGCGGUGGUCg -3'
miRNA:   3'- uaACCgGCGCGCCG--------------CCC---------UGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 74587 0.66 0.657811
Target:  5'- --cGGCgGCGCGGCGucccgcGGcCGGcGcGCCu -3'
miRNA:   3'- uaaCCGgCGCGCCGC------CCuGCCaC-CGG- -5'
13980 3' -64.3 NC_003521.1 + 53502 0.66 0.667199
Target:  5'- --aGGCCGCugcuGCGGCGucGCaGcGGCCg -3'
miRNA:   3'- uaaCCGGCG----CGCCGCccUGcCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 138820 0.66 0.657811
Target:  5'- -aUGGCgCGCcugaugGCGGCGGcuACGGccugcGGCCa -3'
miRNA:   3'- uaACCG-GCG------CGCCGCCc-UGCCa----CCGG- -5'
13980 3' -64.3 NC_003521.1 + 73566 0.66 0.657811
Target:  5'- -cUGGCCGUG-GuGCGGG-CGcUGGUCa -3'
miRNA:   3'- uaACCGGCGCgC-CGCCCuGCcACCGG- -5'
13980 3' -64.3 NC_003521.1 + 138696 0.66 0.648405
Target:  5'- --aGGCCGUGagccugGGCGGcACGGgcgcUGGCUg -3'
miRNA:   3'- uaaCCGGCGCg-----CCGCCcUGCC----ACCGG- -5'
13980 3' -64.3 NC_003521.1 + 77711 0.66 0.648405
Target:  5'- -gUGGCgGCGuuGuUGGcGACGGcGGCCu -3'
miRNA:   3'- uaACCGgCGCgcC-GCC-CUGCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 145864 0.66 0.648405
Target:  5'- --gGGcCCG-GCGGCGGG-CGGc-GCCg -3'
miRNA:   3'- uaaCC-GGCgCGCCGCCCuGCCacCGG- -5'
13980 3' -64.3 NC_003521.1 + 32108 0.66 0.656871
Target:  5'- uUUGGCgGCGCGGCugaucucGGGcagguagcgggcGCGGUGcaCCa -3'
miRNA:   3'- uAACCGgCGCGCCG-------CCC------------UGCCACc-GG- -5'
13980 3' -64.3 NC_003521.1 + 27515 0.66 0.657811
Target:  5'- --gGGgCGUGCGGCccgaGGcgcccACGGUGGCg -3'
miRNA:   3'- uaaCCgGCGCGCCGc---CC-----UGCCACCGg -5'
13980 3' -64.3 NC_003521.1 + 116465 0.66 0.629568
Target:  5'- --cGGCCGU--GGUGGGACacGUGGCg -3'
miRNA:   3'- uaaCCGGCGcgCCGCCCUGc-CACCGg -5'
13980 3' -64.3 NC_003521.1 + 124597 0.66 0.6803
Target:  5'- -aUGGCCGacgaggacgacgaaGCGGCGGcGACGGcgacGUCu -3'
miRNA:   3'- uaACCGGCg-------------CGCCGCC-CUGCCac--CGG- -5'
13980 3' -64.3 NC_003521.1 + 88047 0.66 0.657811
Target:  5'- cGUUGaG-CGCGCGGaUGaGGucGCGGUGGUCg -3'
miRNA:   3'- -UAAC-CgGCGCGCC-GC-CC--UGCCACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.