miRNA display CGI


Results 21 - 40 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13980 3' -64.3 NC_003521.1 + 21960 0.71 0.354418
Target:  5'- --gGGCgaGCGCGGCGGGAcucguuCGGUuucGCCg -3'
miRNA:   3'- uaaCCGg-CGCGCCGCCCU------GCCAc--CGG- -5'
13980 3' -64.3 NC_003521.1 + 23098 0.75 0.225528
Target:  5'- -gUGGCCGgGCGGgGGGcCGGgacGGCa -3'
miRNA:   3'- uaACCGGCgCGCCgCCCuGCCa--CCGg -5'
13980 3' -64.3 NC_003521.1 + 24459 0.73 0.26925
Target:  5'- --aGGuCCGCGCGGaccaCGGGccucacacccuCGGUGGCCa -3'
miRNA:   3'- uaaCC-GGCGCGCC----GCCCu----------GCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 27515 0.66 0.657811
Target:  5'- --gGGgCGUGCGGCccgaGGcgcccACGGUGGCg -3'
miRNA:   3'- uaaCCgGCGCGCCGc---CC-----UGCCACCGg -5'
13980 3' -64.3 NC_003521.1 + 28313 0.68 0.545545
Target:  5'- --cGGCagcgaccccgGCGCGGCcugcGGAccgcCGGUGGCCg -3'
miRNA:   3'- uaaCCGg---------CGCGCCGc---CCU----GCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 28342 0.68 0.527293
Target:  5'- --cGGCCauGUGCGuGUGGGccACGGgccUGGCCu -3'
miRNA:   3'- uaaCCGG--CGCGC-CGCCC--UGCC---ACCGG- -5'
13980 3' -64.3 NC_003521.1 + 31865 0.69 0.482748
Target:  5'- --cGGCgGCGCGGUGcGaGCGGUaccgcaccgccaGGCCg -3'
miRNA:   3'- uaaCCGgCGCGCCGC-CcUGCCA------------CCGG- -5'
13980 3' -64.3 NC_003521.1 + 32108 0.66 0.656871
Target:  5'- uUUGGCgGCGCGGCugaucucGGGcagguagcgggcGCGGUGcaCCa -3'
miRNA:   3'- uAACCGgCGCGCCG-------CCC------------UGCCACc-GG- -5'
13980 3' -64.3 NC_003521.1 + 32349 0.71 0.354418
Target:  5'- cGUUuGCCGgaGcCGGCGGGACGG-GGCUu -3'
miRNA:   3'- -UAAcCGGCg-C-GCCGCCCUGCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 34332 0.67 0.573284
Target:  5'- cGUUGGaa--GCGGCGcaGGGCGGaGGCCg -3'
miRNA:   3'- -UAACCggcgCGCCGC--CCUGCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 35997 0.67 0.563996
Target:  5'- cUUGGUCaGCGaCGGCGacGGA-GGUGGCg -3'
miRNA:   3'- uAACCGG-CGC-GCCGC--CCUgCCACCGg -5'
13980 3' -64.3 NC_003521.1 + 36592 0.66 0.648405
Target:  5'- -cUGGCCuG-GCGGCGGG----UGGCCg -3'
miRNA:   3'- uaACCGG-CgCGCCGCCCugccACCGG- -5'
13980 3' -64.3 NC_003521.1 + 37410 0.7 0.423647
Target:  5'- --gGGCCuuguGCGaCGGCcuGGGAgGcGUGGCCg -3'
miRNA:   3'- uaaCCGG----CGC-GCCG--CCCUgC-CACCGG- -5'
13980 3' -64.3 NC_003521.1 + 38234 0.72 0.326317
Target:  5'- --cGGCCucgGCG-GGCGGGGCGGagacgcGGCCc -3'
miRNA:   3'- uaaCCGG---CGCgCCGCCCUGCCa-----CCGG- -5'
13980 3' -64.3 NC_003521.1 + 39200 0.71 0.353695
Target:  5'- cUUGGUCagcguccgcagcaGCGCGGgcuCGGGgacaGCGGUGGCCc -3'
miRNA:   3'- uAACCGG-------------CGCGCC---GCCC----UGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 39525 0.79 0.109115
Target:  5'- --gGGUCGCGCGGCGagagcuggcgcaGGuCGGUGGCCc -3'
miRNA:   3'- uaaCCGGCGCGCCGC------------CCuGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 39575 0.69 0.488879
Target:  5'- -cUGGCUGCGCGGCGuGAUGcgcgcguagaagccGUacGGCCg -3'
miRNA:   3'- uaACCGGCGCGCCGCcCUGC--------------CA--CCGG- -5'
13980 3' -64.3 NC_003521.1 + 40872 0.66 0.667199
Target:  5'- -gUGaGCCGCGgaGGgaagggacCGGGGCGGgGGUCa -3'
miRNA:   3'- uaAC-CGGCGCg-CC--------GCCCUGCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 42613 0.66 0.676562
Target:  5'- --cGGCCGC-CGGCGGcGCcGUcGCCg -3'
miRNA:   3'- uaaCCGGCGcGCCGCCcUGcCAcCGG- -5'
13980 3' -64.3 NC_003521.1 + 43473 0.73 0.275173
Target:  5'- --gGGCCaGCGCGGCGGccgugcuggccGCGGcGGCCa -3'
miRNA:   3'- uaaCCGG-CGCGCCGCCc----------UGCCaCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.