miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13980 3' -64.3 NC_003521.1 + 204890 1.09 0.000867
Target:  5'- gAUUGGCCGCGCGGCGGGACGGUGGCCg -3'
miRNA:   3'- -UAACCGGCGCGCCGCCCUGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 240622 0.72 0.319555
Target:  5'- --cGGCggCGUGCGGCGGGcCGGccGGUCg -3'
miRNA:   3'- uaaCCG--GCGCGCCGCCCuGCCa-CCGG- -5'
13980 3' -64.3 NC_003521.1 + 111243 0.72 0.329051
Target:  5'- --cGGCCgGCGCGGCGcGGCGGagcagccaucgucgGGCCc -3'
miRNA:   3'- uaaCCGG-CGCGCCGCcCUGCCa-------------CCGG- -5'
13980 3' -64.3 NC_003521.1 + 124597 0.66 0.6803
Target:  5'- -aUGGCCGacgaggacgacgaaGCGGCGGcGACGGcgacGUCu -3'
miRNA:   3'- uaACCGGCg-------------CGCCGCC-CUGCCac--CGG- -5'
13980 3' -64.3 NC_003521.1 + 14752 0.76 0.183268
Target:  5'- --gGGCCGgcCGCGGcCGGGGCGcgccuucGUGGCCg -3'
miRNA:   3'- uaaCCGGC--GCGCC-GCCCUGC-------CACCGG- -5'
13980 3' -64.3 NC_003521.1 + 160326 0.75 0.206014
Target:  5'- --gGaGCCGUG-GGCGGcGCGGUGGCCu -3'
miRNA:   3'- uaaC-CGGCGCgCCGCCcUGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 98478 0.75 0.220507
Target:  5'- --cGGCCGCgGCGGCcGuGGCGGcGGCCu -3'
miRNA:   3'- uaaCCGGCG-CGCCGcC-CUGCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 23098 0.75 0.225528
Target:  5'- -gUGGCCGgGCGGgGGGcCGGgacGGCa -3'
miRNA:   3'- uaACCGGCgCGCCgCCCuGCCa--CCGg -5'
13980 3' -64.3 NC_003521.1 + 123560 0.74 0.257715
Target:  5'- --cGGCCGaCGaCGGCGGuGGCGGgaUGGCg -3'
miRNA:   3'- uaaCCGGC-GC-GCCGCC-CUGCC--ACCGg -5'
13980 3' -64.3 NC_003521.1 + 73 0.72 0.319555
Target:  5'- --cGGCggCGUGCGGCGGGcCGGccGGUCg -3'
miRNA:   3'- uaaCCG--GCGCGCCGCCCuGCCa-CCGG- -5'
13980 3' -64.3 NC_003521.1 + 91642 0.73 0.29799
Target:  5'- -gUGGCCGCcgGUGGCGacgcgcgccgagacGGACgacgaGGUGGCCa -3'
miRNA:   3'- uaACCGGCG--CGCCGC--------------CCUG-----CCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 187456 0.74 0.244953
Target:  5'- -gUGcGCCGCGuCaGCGGGACGGUgcugcacaucggcuGGCCc -3'
miRNA:   3'- uaAC-CGGCGC-GcCGCCCUGCCA--------------CCGG- -5'
13980 3' -64.3 NC_003521.1 + 209083 0.84 0.053494
Target:  5'- --cGGUCGagGCGGCGGaGGCGGUGGCCg -3'
miRNA:   3'- uaaCCGGCg-CGCCGCC-CUGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 195183 0.73 0.299903
Target:  5'- --cGGaCCcCGCGGagcCGGcGGCGGUGGCCg -3'
miRNA:   3'- uaaCC-GGcGCGCC---GCC-CUGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 39525 0.79 0.109115
Target:  5'- --gGGUCGCGCGGCGagagcuggcgcaGGuCGGUGGCCc -3'
miRNA:   3'- uaaCCGGCGCGCCGC------------CCuGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 186653 0.75 0.225528
Target:  5'- ---cGUCGCGCGGCGGuGGCGGaGGCg -3'
miRNA:   3'- uaacCGGCGCGCCGCC-CUGCCaCCGg -5'
13980 3' -64.3 NC_003521.1 + 166639 0.72 0.312899
Target:  5'- --gGGCCGCGCGcCGGGcgccGCGGcgcagcGGCCa -3'
miRNA:   3'- uaaCCGGCGCGCcGCCC----UGCCa-----CCGG- -5'
13980 3' -64.3 NC_003521.1 + 38234 0.72 0.326317
Target:  5'- --cGGCCucgGCG-GGCGGGGCGGagacgcGGCCc -3'
miRNA:   3'- uaaCCGG---CGCgCCGCCCUGCCa-----CCGG- -5'
13980 3' -64.3 NC_003521.1 + 167721 0.77 0.1674
Target:  5'- -gUGGCCacgguggauuGCGUGGCGcuGCGGUGGCCg -3'
miRNA:   3'- uaACCGG----------CGCGCCGCccUGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 207909 0.75 0.214123
Target:  5'- --cGGCCGCcaccuacgccggggGCGGCGGGcACGGcGGCa -3'
miRNA:   3'- uaaCCGGCG--------------CGCCGCCC-UGCCaCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.