miRNA display CGI


Results 41 - 60 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13980 3' -64.3 NC_003521.1 + 43568 0.71 0.361705
Target:  5'- --cGGCCGCugacUGGgGGGACGGgGGCa -3'
miRNA:   3'- uaaCCGGCGc---GCCgCCCUGCCaCCGg -5'
13980 3' -64.3 NC_003521.1 + 44062 0.67 0.591025
Target:  5'- --cGGUCGCGcCGGcCGGGgcagcagACGGUGcaggcGCCg -3'
miRNA:   3'- uaaCCGGCGC-GCC-GCCC-------UGCCAC-----CGG- -5'
13980 3' -64.3 NC_003521.1 + 45716 0.71 0.376588
Target:  5'- uAUUGGCgGgGCGucuGCGGGACGcGggucaGGCCg -3'
miRNA:   3'- -UAACCGgCgCGC---CGCCCUGC-Ca----CCGG- -5'
13980 3' -64.3 NC_003521.1 + 46389 0.66 0.648405
Target:  5'- --gGGgCGCGgGGUgcguGGGGCGcGcgGGCCa -3'
miRNA:   3'- uaaCCgGCGCgCCG----CCCUGC-Ca-CCGG- -5'
13980 3' -64.3 NC_003521.1 + 46443 0.67 0.591961
Target:  5'- --cGGCgGgGCuGCGGGGgcUGGUcGGCCu -3'
miRNA:   3'- uaaCCGgCgCGcCGCCCU--GCCA-CCGG- -5'
13980 3' -64.3 NC_003521.1 + 46552 0.66 0.638047
Target:  5'- --gGGCCuCGCGcCGGGugcugaaGCGGUGGUUg -3'
miRNA:   3'- uaaCCGGcGCGCcGCCC-------UGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 47614 0.69 0.456907
Target:  5'- cUUGGCCGCcaucguccagGCGGCcGuGACGGcGGCUc -3'
miRNA:   3'- uAACCGGCG----------CGCCGcC-CUGCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 49970 0.67 0.610738
Target:  5'- --aGGaCGaGCGGCGGGugGGUcgagggagccgGGUCg -3'
miRNA:   3'- uaaCCgGCgCGCCGCCCugCCA-----------CCGG- -5'
13980 3' -64.3 NC_003521.1 + 50775 0.67 0.567707
Target:  5'- --aGaCCGCGCGGCGGuccuggucgaucggcGACGGUgauGGCa -3'
miRNA:   3'- uaaCcGGCGCGCCGCC---------------CUGCCA---CCGg -5'
13980 3' -64.3 NC_003521.1 + 53352 0.69 0.465439
Target:  5'- ---cGCCgGCGCGGCGGcGGaGG-GGCCg -3'
miRNA:   3'- uaacCGG-CGCGCCGCC-CUgCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 53502 0.66 0.667199
Target:  5'- --aGGCCGCugcuGCGGCGucGCaGcGGCCg -3'
miRNA:   3'- uaaCCGGCG----CGCCGCccUGcCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 57154 0.67 0.620149
Target:  5'- --cGGCCacGCGCGGCaGGucguCGGcGuGCCg -3'
miRNA:   3'- uaaCCGG--CGCGCCGcCCu---GCCaC-CGG- -5'
13980 3' -64.3 NC_003521.1 + 58408 0.66 0.676562
Target:  5'- --cGGCCGCgugauGCGGCGGuuGACGaa-GCCg -3'
miRNA:   3'- uaaCCGGCG-----CGCCGCC--CUGCcacCGG- -5'
13980 3' -64.3 NC_003521.1 + 60690 0.75 0.206014
Target:  5'- --cGGCCGCGCGG-GGGAccCGGgGGCg -3'
miRNA:   3'- uaaCCGGCGCGCCgCCCU--GCCaCCGg -5'
13980 3' -64.3 NC_003521.1 + 68047 0.67 0.620149
Target:  5'- -gUGGUC-CGCGGCGccccCGGUGGCa -3'
miRNA:   3'- uaACCGGcGCGCCGCccu-GCCACCGg -5'
13980 3' -64.3 NC_003521.1 + 69726 0.68 0.527293
Target:  5'- --aGGUaCGCGguaaCGGCGGGcggggaggcgGCGGUGGCa -3'
miRNA:   3'- uaaCCG-GCGC----GCCGCCC----------UGCCACCGg -5'
13980 3' -64.3 NC_003521.1 + 72531 0.67 0.591961
Target:  5'- --cGaGCUGCggagGCGGCGGcGACGGUGucGUCg -3'
miRNA:   3'- uaaC-CGGCG----CGCCGCC-CUGCCAC--CGG- -5'
13980 3' -64.3 NC_003521.1 + 72846 0.69 0.456907
Target:  5'- --cGGCC-UGgGGCGGcGACGGUaGGCa -3'
miRNA:   3'- uaaCCGGcGCgCCGCC-CUGCCA-CCGg -5'
13980 3' -64.3 NC_003521.1 + 73566 0.66 0.657811
Target:  5'- -cUGGCCGUG-GuGCGGG-CGcUGGUCa -3'
miRNA:   3'- uaACCGGCGCgC-CGCCCuGCcACCGG- -5'
13980 3' -64.3 NC_003521.1 + 74228 0.66 0.629568
Target:  5'- --aGGCCGU-CGGCGccguGACGGUGGaCg -3'
miRNA:   3'- uaaCCGGCGcGCCGCc---CUGCCACCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.