miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13980 5' -56.7 NC_003521.1 + 58970 0.67 0.906632
Target:  5'- -cGAAGaaGCGcGCCGUcaGGCACUGGUg -3'
miRNA:   3'- uaUUUCa-CGCaCGGCA--CCGUGGCCGg -5'
13980 5' -56.7 NC_003521.1 + 64736 0.69 0.819645
Target:  5'- -aGAAGaUGgacGCCGUGGCcaagacGCCGGCCg -3'
miRNA:   3'- uaUUUC-ACgcaCGGCACCG------UGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 70087 0.68 0.844004
Target:  5'- ------aGCGgguUGCCGcagGGCACCuGGCCg -3'
miRNA:   3'- uauuucaCGC---ACGGCa--CCGUGG-CCGG- -5'
13980 5' -56.7 NC_003521.1 + 71277 0.74 0.541803
Target:  5'- -cGGAG-GCGgggGCCGcGGCACgGGCCc -3'
miRNA:   3'- uaUUUCaCGCa--CGGCaCCGUGgCCGG- -5'
13980 5' -56.7 NC_003521.1 + 72974 0.67 0.918185
Target:  5'- cAUGAAGaaGCG-GCCGcggggGGC-CUGGCCg -3'
miRNA:   3'- -UAUUUCa-CGCaCGGCa----CCGuGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 73127 0.67 0.912521
Target:  5'- -gGAGGUGC-UGCaCGgcgggGGCAgCGGCg -3'
miRNA:   3'- uaUUUCACGcACG-GCa----CCGUgGCCGg -5'
13980 5' -56.7 NC_003521.1 + 74566 0.67 0.90052
Target:  5'- ------cGCGUGcCCGUGaGCA-CGGCCc -3'
miRNA:   3'- uauuucaCGCAC-GGCAC-CGUgGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 76698 0.72 0.640642
Target:  5'- --cGGGUccGUGUaGCgGUGGCACCGGCg -3'
miRNA:   3'- uauUUCA--CGCA-CGgCACCGUGGCCGg -5'
13980 5' -56.7 NC_003521.1 + 77616 0.7 0.793832
Target:  5'- ---cGG-GCGcGcCCGUgacGGCGCCGGCCg -3'
miRNA:   3'- uauuUCaCGCaC-GGCA---CCGUGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 77712 0.77 0.413752
Target:  5'- -aGGAGgcgGCGgugGUCGUGGCGCUGGCg -3'
miRNA:   3'- uaUUUCa--CGCa--CGGCACCGUGGCCGg -5'
13980 5' -56.7 NC_003521.1 + 85468 0.7 0.748153
Target:  5'- -aAAGGUG-GUcGUCGUGGUGCCGGUg -3'
miRNA:   3'- uaUUUCACgCA-CGGCACCGUGGCCGg -5'
13980 5' -56.7 NC_003521.1 + 86267 0.66 0.943108
Target:  5'- cUGAGGUucugcGCGgcgaucaCCGUGGUGCCGGUg -3'
miRNA:   3'- uAUUUCA-----CGCac-----GGCACCGUGGCCGg -5'
13980 5' -56.7 NC_003521.1 + 87266 0.67 0.894187
Target:  5'- ----uGUGCGccgUGCgCGUGGCcaACgGGCCc -3'
miRNA:   3'- uauuuCACGC---ACG-GCACCG--UGgCCGG- -5'
13980 5' -56.7 NC_003521.1 + 87351 0.67 0.912521
Target:  5'- -cAAGGgcauccGCGUGUaCGUGGCcugcgagccGCUGGCCu -3'
miRNA:   3'- uaUUUCa-----CGCACG-GCACCG---------UGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 88060 0.67 0.906632
Target:  5'- gAUGAGGUcGCGgugGUCGgcGGCGCCcgugaccacgGGCCa -3'
miRNA:   3'- -UAUUUCA-CGCa--CGGCa-CCGUGG----------CCGG- -5'
13980 5' -56.7 NC_003521.1 + 88128 0.67 0.887637
Target:  5'- ---cAGUaCGUGCCGa-GCACCGaGCCg -3'
miRNA:   3'- uauuUCAcGCACGGCacCGUGGC-CGG- -5'
13980 5' -56.7 NC_003521.1 + 89005 0.66 0.938576
Target:  5'- -aGAAGgacGCGga-CGUGGUggaacacguGCCGGCCa -3'
miRNA:   3'- uaUUUCa--CGCacgGCACCG---------UGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 92310 0.69 0.802585
Target:  5'- -gGGAGgagGCGcaGCCGcGGCAUgGGCCu -3'
miRNA:   3'- uaUUUCa--CGCa-CGGCaCCGUGgCCGG- -5'
13980 5' -56.7 NC_003521.1 + 95136 0.66 0.943108
Target:  5'- gAUAGGGUaagGCGgccgcGCCGacGGCaaggagucgGCCGGCCg -3'
miRNA:   3'- -UAUUUCA---CGCa----CGGCa-CCG---------UGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 98482 0.77 0.40532
Target:  5'- ------cGCGgcgGCCGUGGCGgCGGCCu -3'
miRNA:   3'- uauuucaCGCa--CGGCACCGUgGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.