miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13980 5' -56.7 NC_003521.1 + 16 0.67 0.918185
Target:  5'- --cGAGUGUGgcgcguguuUGCCGUGGCcgggAUCGGUg -3'
miRNA:   3'- uauUUCACGC---------ACGGCACCG----UGGCCGg -5'
13980 5' -56.7 NC_003521.1 + 73 0.66 0.938576
Target:  5'- ---cGGcgGCGUGCgGcGG-GCCGGCCg -3'
miRNA:   3'- uauuUCa-CGCACGgCaCCgUGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 389 0.72 0.680383
Target:  5'- --uGAGUGUGUGC--UGGCGCgCGGCUg -3'
miRNA:   3'- uauUUCACGCACGgcACCGUG-GCCGG- -5'
13980 5' -56.7 NC_003521.1 + 976 0.67 0.912521
Target:  5'- -gAGAGgccgGCGgucugcucCCGUGG-GCCGGCCg -3'
miRNA:   3'- uaUUUCa---CGCac------GGCACCgUGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 5315 0.69 0.819645
Target:  5'- -cGGGGgcgGCGUGCCc---CGCCGGCCg -3'
miRNA:   3'- uaUUUCa--CGCACGGcaccGUGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 5821 0.69 0.802585
Target:  5'- -aGGGGUG-GUGCCG-GGUcCCGGCg -3'
miRNA:   3'- uaUUUCACgCACGGCaCCGuGGCCGg -5'
13980 5' -56.7 NC_003521.1 + 22362 0.68 0.844004
Target:  5'- -----cUGCGcccacGgCGUGGUGCCGGCCa -3'
miRNA:   3'- uauuucACGCa----CgGCACCGUGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 28348 0.67 0.887637
Target:  5'- ----uGUGCGUGUgGgccacgGGC-CUGGCCu -3'
miRNA:   3'- uauuuCACGCACGgCa-----CCGuGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 30067 0.67 0.887637
Target:  5'- ---cAGUcUGUGCCGUcccCGCCGGCCg -3'
miRNA:   3'- uauuUCAcGCACGGCAcc-GUGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 31722 0.66 0.943108
Target:  5'- ------cGCGUGCUG-GGaCGCCgcGGCCa -3'
miRNA:   3'- uauuucaCGCACGGCaCC-GUGG--CCGG- -5'
13980 5' -56.7 NC_003521.1 + 32401 0.71 0.690244
Target:  5'- ---cGG-GCGUGCgacacagcagccCGUGGCGCaCGGCCu -3'
miRNA:   3'- uauuUCaCGCACG------------GCACCGUG-GCCGG- -5'
13980 5' -56.7 NC_003521.1 + 36181 0.66 0.928834
Target:  5'- ------gGCGUGCCcacGCACCuGGCCg -3'
miRNA:   3'- uauuucaCGCACGGcacCGUGG-CCGG- -5'
13980 5' -56.7 NC_003521.1 + 37424 0.66 0.938576
Target:  5'- ------cGUGUGgCGcGGCGCCGaGCCu -3'
miRNA:   3'- uauuucaCGCACgGCaCCGUGGC-CGG- -5'
13980 5' -56.7 NC_003521.1 + 39537 0.66 0.938576
Target:  5'- -gAGAGcugGCGcagGUCgGUGGCcccgacGCCGGCCa -3'
miRNA:   3'- uaUUUCa--CGCa--CGG-CACCG------UGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 40711 0.72 0.680383
Target:  5'- --uGAGUGUGUGC--UGGCGCgCGGCUg -3'
miRNA:   3'- uauUUCACGCACGgcACCGUG-GCCGG- -5'
13980 5' -56.7 NC_003521.1 + 45418 0.67 0.887637
Target:  5'- gGUAGccGGUGCccGCCGUcGGCGCggucaUGGCCu -3'
miRNA:   3'- -UAUU--UCACGcaCGGCA-CCGUG-----GCCGG- -5'
13980 5' -56.7 NC_003521.1 + 46891 0.69 0.802585
Target:  5'- -cGAAGUGgGUGUCG-GGCACUcGUCg -3'
miRNA:   3'- uaUUUCACgCACGGCaCCGUGGcCGG- -5'
13980 5' -56.7 NC_003521.1 + 48926 0.66 0.943108
Target:  5'- ---cGGUGUccGUGaaggaCGUGGCGCCGccGCCc -3'
miRNA:   3'- uauuUCACG--CACg----GCACCGUGGC--CGG- -5'
13980 5' -56.7 NC_003521.1 + 49108 0.66 0.933818
Target:  5'- -cAAAGUGCGcguggUGaCCGcGGCGCCGcuGCUg -3'
miRNA:   3'- uaUUUCACGC-----AC-GGCaCCGUGGC--CGG- -5'
13980 5' -56.7 NC_003521.1 + 57606 0.67 0.912521
Target:  5'- --cGAGUcaGCGUGCCGUcGCGCUccaGGCa -3'
miRNA:   3'- uauUUCA--CGCACGGCAcCGUGG---CCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.