miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13980 5' -56.7 NC_003521.1 + 240622 0.66 0.938576
Target:  5'- ---cGGcgGCGUGCgGcGG-GCCGGCCg -3'
miRNA:   3'- uauuUCa-CGCACGgCaCCgUGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 240565 0.67 0.918185
Target:  5'- --cGAGUGUGgcgcguguuUGCCGUGGCcgggAUCGGUg -3'
miRNA:   3'- uauUUCACGC---------ACGGCACCG----UGGCCGg -5'
13980 5' -56.7 NC_003521.1 + 239764 0.66 0.938576
Target:  5'- -gAGAGcugGCGcagGUCgGUGGCcccgacGCCGGCCa -3'
miRNA:   3'- uaUUUCa--CGCa--CGG-CACCG------UGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 234737 0.69 0.811192
Target:  5'- ----cGUgGCGgaacGCCGccGCACCGGCCg -3'
miRNA:   3'- uauuuCA-CGCa---CGGCacCGUGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 227632 0.71 0.690244
Target:  5'- gGUGAAGUugGCGUGCaGUGaCAgCGGCCg -3'
miRNA:   3'- -UAUUUCA--CGCACGgCACcGUgGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 226068 0.67 0.918185
Target:  5'- -cGAAG-GCGcGCCccGGCcgcgGCCGGCCc -3'
miRNA:   3'- uaUUUCaCGCaCGGcaCCG----UGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 222325 0.69 0.819645
Target:  5'- ------aGCGUGUgGUGGCACaCGGgCa -3'
miRNA:   3'- uauuucaCGCACGgCACCGUG-GCCgG- -5'
13980 5' -56.7 NC_003521.1 + 220528 0.69 0.827936
Target:  5'- ---uGGUGC-UGCa-UGGCGCCGGCg -3'
miRNA:   3'- uauuUCACGcACGgcACCGUGGCCGg -5'
13980 5' -56.7 NC_003521.1 + 218372 0.67 0.902991
Target:  5'- cGUGAgccAG-GCGUGCCGcgugaagcgcgggcGGUACuCGGCCa -3'
miRNA:   3'- -UAUU---UCaCGCACGGCa-------------CCGUG-GCCGG- -5'
13980 5' -56.7 NC_003521.1 + 214520 0.7 0.784941
Target:  5'- -gGAAGcGCGgacaGCgCGUGGCcCUGGCCu -3'
miRNA:   3'- uaUUUCaCGCa---CG-GCACCGuGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 213738 0.66 0.933818
Target:  5'- ------gGCGccgcagaagGCCGUGGUGgCGGCCa -3'
miRNA:   3'- uauuucaCGCa--------CGGCACCGUgGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 213458 0.67 0.906632
Target:  5'- uUGAAG-GCGUcGCaCGUcaugacGGCGCCGGUg -3'
miRNA:   3'- uAUUUCaCGCA-CG-GCA------CCGUGGCCGg -5'
13980 5' -56.7 NC_003521.1 + 212057 0.67 0.887637
Target:  5'- -gAAAGUGCagcgcuaggGCgGUGGCG-CGGCCc -3'
miRNA:   3'- uaUUUCACGca-------CGgCACCGUgGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 210366 0.66 0.943108
Target:  5'- --cAGGUGCGcGUCaucGGCACCcucGGCCg -3'
miRNA:   3'- uauUUCACGCaCGGca-CCGUGG---CCGG- -5'
13980 5' -56.7 NC_003521.1 + 209864 0.66 0.928834
Target:  5'- -----cUGCGUGCCGa-GCGCCuGGCUu -3'
miRNA:   3'- uauuucACGCACGGCacCGUGG-CCGG- -5'
13980 5' -56.7 NC_003521.1 + 208745 0.71 0.738694
Target:  5'- ------gGCGcugGCCGUGGcCACgGGCCa -3'
miRNA:   3'- uauuucaCGCa--CGGCACC-GUGgCCGG- -5'
13980 5' -56.7 NC_003521.1 + 207323 0.74 0.571116
Target:  5'- --uGAGUGCGUGCCGgacgcucgcgUGGCGCCcgagaucugGGUCu -3'
miRNA:   3'- uauUUCACGCACGGC----------ACCGUGG---------CCGG- -5'
13980 5' -56.7 NC_003521.1 + 204926 1.1 0.003093
Target:  5'- uAUAAAGUGCGUGCCGUGGCACCGGCCa -3'
miRNA:   3'- -UAUUUCACGCACGGCACCGUGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 200301 0.66 0.938576
Target:  5'- ---cGGcgGCGUGCgGcGG-GCCGGCCg -3'
miRNA:   3'- uauuUCa-CGCACGgCaCCgUGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 200244 0.67 0.918185
Target:  5'- --cGAGUGUGgcgcguguuUGCCGUGGCcgggAUCGGUg -3'
miRNA:   3'- uauUUCACGC---------ACGGCACCG----UGGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.