miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13980 5' -56.7 NC_003521.1 + 36181 0.66 0.928834
Target:  5'- ------gGCGUGCCcacGCACCuGGCCg -3'
miRNA:   3'- uauuucaCGCACGGcacCGUGG-CCGG- -5'
13980 5' -56.7 NC_003521.1 + 209864 0.66 0.928834
Target:  5'- -----cUGCGUGCCGa-GCGCCuGGCUu -3'
miRNA:   3'- uauuucACGCACGGCacCGUGG-CCGG- -5'
13980 5' -56.7 NC_003521.1 + 155398 0.66 0.928834
Target:  5'- -cGAGGccgGCGggggGCUG-GGCACCggaGGCCu -3'
miRNA:   3'- uaUUUCa--CGCa---CGGCaCCGUGG---CCGG- -5'
13980 5' -56.7 NC_003521.1 + 31722 0.66 0.943108
Target:  5'- ------cGCGUGCUG-GGaCGCCgcGGCCa -3'
miRNA:   3'- uauuucaCGCACGGCaCC-GUGG--CCGG- -5'
13980 5' -56.7 NC_003521.1 + 200301 0.66 0.938576
Target:  5'- ---cGGcgGCGUGCgGcGG-GCCGGCCg -3'
miRNA:   3'- uauuUCa-CGCACGgCaCCgUGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 154648 0.66 0.933818
Target:  5'- --cAAGcaCGUGCCGcUGGCcgagGCCGGCa -3'
miRNA:   3'- uauUUCacGCACGGC-ACCG----UGGCCGg -5'
13980 5' -56.7 NC_003521.1 + 95136 0.66 0.943108
Target:  5'- gAUAGGGUaagGCGgccgcGCCGacGGCaaggagucgGCCGGCCg -3'
miRNA:   3'- -UAUUUCA---CGCa----CGGCa-CCG---------UGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 153336 0.66 0.923622
Target:  5'- ----cGUGgaUGUGCUG-GGCACCuucGGCCg -3'
miRNA:   3'- uauuuCAC--GCACGGCaCCGUGG---CCGG- -5'
13980 5' -56.7 NC_003521.1 + 239764 0.66 0.938576
Target:  5'- -gAGAGcugGCGcagGUCgGUGGCcccgacGCCGGCCa -3'
miRNA:   3'- uaUUUCa--CGCa--CGG-CACCG------UGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 210366 0.66 0.943108
Target:  5'- --cAGGUGCGcGUCaucGGCACCcucGGCCg -3'
miRNA:   3'- uauUUCACGCaCGGca-CCGUGG---CCGG- -5'
13980 5' -56.7 NC_003521.1 + 139857 0.66 0.928834
Target:  5'- ----cGUGCGcGCCG-GGCA-CGGCg -3'
miRNA:   3'- uauuuCACGCaCGGCaCCGUgGCCGg -5'
13980 5' -56.7 NC_003521.1 + 49108 0.66 0.933818
Target:  5'- -cAAAGUGCGcguggUGaCCGcGGCGCCGcuGCUg -3'
miRNA:   3'- uaUUUCACGC-----AC-GGCaCCGUGGC--CGG- -5'
13980 5' -56.7 NC_003521.1 + 148423 0.66 0.933818
Target:  5'- ---uGGUGCGgGCgGccGCGCCGGCg -3'
miRNA:   3'- uauuUCACGCaCGgCacCGUGGCCGg -5'
13980 5' -56.7 NC_003521.1 + 168451 0.66 0.928834
Target:  5'- cGUGAAGaGCGUGauGgGGCGCUGGUg -3'
miRNA:   3'- -UAUUUCaCGCACggCaCCGUGGCCGg -5'
13980 5' -56.7 NC_003521.1 + 139585 0.66 0.928834
Target:  5'- --cAGGU-CuUGCCGUGGCGCCgcGGCa -3'
miRNA:   3'- uauUUCAcGcACGGCACCGUGG--CCGg -5'
13980 5' -56.7 NC_003521.1 + 213738 0.66 0.933818
Target:  5'- ------gGCGccgcagaagGCCGUGGUGgCGGCCa -3'
miRNA:   3'- uauuucaCGCa--------CGGCACCGUgGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 160775 0.66 0.938576
Target:  5'- ------cGCGUGCCGccggcGGCACgCGGgCg -3'
miRNA:   3'- uauuucaCGCACGGCa----CCGUG-GCCgG- -5'
13980 5' -56.7 NC_003521.1 + 104793 0.66 0.923622
Target:  5'- --cAGGUGCGUGCgGaaGCACCGcGUg -3'
miRNA:   3'- uauUUCACGCACGgCacCGUGGC-CGg -5'
13980 5' -56.7 NC_003521.1 + 98818 0.66 0.923622
Target:  5'- --cGAG-GCGUugcaGCUGcuUGGCGCgGGCCa -3'
miRNA:   3'- uauUUCaCGCA----CGGC--ACCGUGgCCGG- -5'
13980 5' -56.7 NC_003521.1 + 186777 0.66 0.928834
Target:  5'- -cGGAGgcgGCG-GUgGUGGCGgCGGCg -3'
miRNA:   3'- uaUUUCa--CGCaCGgCACCGUgGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.