miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13980 5' -56.7 NC_003521.1 + 204926 1.1 0.003093
Target:  5'- uAUAAAGUGCGUGCCGUGGCACCGGCCa -3'
miRNA:   3'- -UAUUUCACGCACGGCACCGUGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 148846 0.88 0.085391
Target:  5'- -cGAGGUGCGUGCCGU-GCACCGcGCCa -3'
miRNA:   3'- uaUUUCACGCACGGCAcCGUGGC-CGG- -5'
13980 5' -56.7 NC_003521.1 + 98482 0.77 0.40532
Target:  5'- ------cGCGgcgGCCGUGGCGgCGGCCu -3'
miRNA:   3'- uauuucaCGCa--CGGCACCGUgGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 77712 0.77 0.413752
Target:  5'- -aGGAGgcgGCGgugGUCGUGGCGCUGGCg -3'
miRNA:   3'- uaUUUCa--CGCa--CGGCACCGUGGCCGg -5'
13980 5' -56.7 NC_003521.1 + 124050 0.75 0.475641
Target:  5'- ------aGCGUGCCGcGGCGgCGGCCc -3'
miRNA:   3'- uauuucaCGCACGGCaCCGUgGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 141195 0.75 0.503547
Target:  5'- ------cGCGggugGCCGUGGCGCUGcGCCg -3'
miRNA:   3'- uauuucaCGCa---CGGCACCGUGGC-CGG- -5'
13980 5' -56.7 NC_003521.1 + 71277 0.74 0.541803
Target:  5'- -cGGAG-GCGgggGCCGcGGCACgGGCCc -3'
miRNA:   3'- uaUUUCaCGCa--CGGCaCCGUGgCCGG- -5'
13980 5' -56.7 NC_003521.1 + 113979 0.74 0.561296
Target:  5'- ---cAG-GCGgccgGCCG-GGCACCGGCUg -3'
miRNA:   3'- uauuUCaCGCa---CGGCaCCGUGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 207323 0.74 0.571116
Target:  5'- --uGAGUGCGUGCCGgacgcucgcgUGGCGCCcgagaucugGGUCu -3'
miRNA:   3'- uauUUCACGCACGGC----------ACCGUGG---------CCGG- -5'
13980 5' -56.7 NC_003521.1 + 139756 0.73 0.600795
Target:  5'- ------cGCGUGCCGacGGCAggauCCGGCCg -3'
miRNA:   3'- uauuucaCGCACGGCa-CCGU----GGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 196289 0.73 0.600795
Target:  5'- --uGAGcGCGUGCCG-GGCcgcuugauGCUGGCCa -3'
miRNA:   3'- uauUUCaCGCACGGCaCCG--------UGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 128483 0.73 0.610741
Target:  5'- ---cAGcgGCGUgagGCUGUGcGCGCCGGCCu -3'
miRNA:   3'- uauuUCa-CGCA---CGGCAC-CGUGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 164614 0.73 0.620702
Target:  5'- --cAGG-GCGUGCCGgcgGGCuuCUGGCCc -3'
miRNA:   3'- uauUUCaCGCACGGCa--CCGu-GGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 113480 0.73 0.630671
Target:  5'- -gGAGG-GCGUGCagauCGUGGCcgACCGGCa -3'
miRNA:   3'- uaUUUCaCGCACG----GCACCG--UGGCCGg -5'
13980 5' -56.7 NC_003521.1 + 76698 0.72 0.640642
Target:  5'- --cGGGUccGUGUaGCgGUGGCACCGGCg -3'
miRNA:   3'- uauUUCA--CGCA-CGgCACCGUGGCCGg -5'
13980 5' -56.7 NC_003521.1 + 389 0.72 0.680383
Target:  5'- --uGAGUGUGUGC--UGGCGCgCGGCUg -3'
miRNA:   3'- uauUUCACGCACGgcACCGUG-GCCGG- -5'
13980 5' -56.7 NC_003521.1 + 40711 0.72 0.680383
Target:  5'- --uGAGUGUGUGC--UGGCGCgCGGCUg -3'
miRNA:   3'- uauUUCACGCACGgcACCGUG-GCCGG- -5'
13980 5' -56.7 NC_003521.1 + 227632 0.71 0.690244
Target:  5'- gGUGAAGUugGCGUGCaGUGaCAgCGGCCg -3'
miRNA:   3'- -UAUUUCA--CGCACGgCACcGUgGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 32401 0.71 0.690244
Target:  5'- ---cGG-GCGUGCgacacagcagccCGUGGCGCaCGGCCu -3'
miRNA:   3'- uauuUCaCGCACG------------GCACCGUG-GCCGG- -5'
13980 5' -56.7 NC_003521.1 + 123892 0.71 0.70982
Target:  5'- -gGAAGcugucGCGUGCUGUcGGCGCgCGGCg -3'
miRNA:   3'- uaUUUCa----CGCACGGCA-CCGUG-GCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.