miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13980 5' -56.7 NC_003521.1 + 220528 0.69 0.827936
Target:  5'- ---uGGUGC-UGCa-UGGCGCCGGCg -3'
miRNA:   3'- uauuUCACGcACGgcACCGUGGCCGg -5'
13980 5' -56.7 NC_003521.1 + 125318 0.7 0.784941
Target:  5'- ------cGCG-GCgGUGGguCCGGCCa -3'
miRNA:   3'- uauuucaCGCaCGgCACCguGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 125092 0.7 0.793832
Target:  5'- gAUGAGGUGCaggcgcUGCgGgaugGGCACCacGGCCg -3'
miRNA:   3'- -UAUUUCACGc-----ACGgCa---CCGUGG--CCGG- -5'
13980 5' -56.7 NC_003521.1 + 77616 0.7 0.793832
Target:  5'- ---cGG-GCGcGcCCGUgacGGCGCCGGCCg -3'
miRNA:   3'- uauuUCaCGCaC-GGCA---CCGUGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 46891 0.69 0.802585
Target:  5'- -cGAAGUGgGUGUCG-GGCACUcGUCg -3'
miRNA:   3'- uaUUUCACgCACGGCaCCGUGGcCGG- -5'
13980 5' -56.7 NC_003521.1 + 5821 0.69 0.802585
Target:  5'- -aGGGGUG-GUGCCG-GGUcCCGGCg -3'
miRNA:   3'- uaUUUCACgCACGGCaCCGuGGCCGg -5'
13980 5' -56.7 NC_003521.1 + 150884 0.69 0.802585
Target:  5'- -cGAGGUGCG-GCCGca-CGCCGGCg -3'
miRNA:   3'- uaUUUCACGCaCGGCaccGUGGCCGg -5'
13980 5' -56.7 NC_003521.1 + 222325 0.69 0.819645
Target:  5'- ------aGCGUGUgGUGGCACaCGGgCa -3'
miRNA:   3'- uauuucaCGCACGgCACCGUG-GCCgG- -5'
13980 5' -56.7 NC_003521.1 + 64736 0.69 0.819645
Target:  5'- -aGAAGaUGgacGCCGUGGCcaagacGCCGGCCg -3'
miRNA:   3'- uaUUUC-ACgcaCGGCACCG------UGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 150558 0.7 0.784941
Target:  5'- ---uGGUGCGgGUgGUGGCGgCGGCg -3'
miRNA:   3'- uauuUCACGCaCGgCACCGUgGCCGg -5'
13980 5' -56.7 NC_003521.1 + 117280 0.7 0.748153
Target:  5'- ----cGU-CG-GCCGUGGUGCCGGCUc -3'
miRNA:   3'- uauuuCAcGCaCGGCACCGUGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 85468 0.7 0.748153
Target:  5'- -aAAGGUG-GUcGUCGUGGUGCCGGUg -3'
miRNA:   3'- uaUUUCACgCA-CGGCACCGUGGCCGg -5'
13980 5' -56.7 NC_003521.1 + 71277 0.74 0.541803
Target:  5'- -cGGAG-GCGgggGCCGcGGCACgGGCCc -3'
miRNA:   3'- uaUUUCaCGCa--CGGCaCCGUGgCCGG- -5'
13980 5' -56.7 NC_003521.1 + 113979 0.74 0.561296
Target:  5'- ---cAG-GCGgccgGCCG-GGCACCGGCUg -3'
miRNA:   3'- uauuUCaCGCa---CGGCaCCGUGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 128483 0.73 0.610741
Target:  5'- ---cAGcgGCGUgagGCUGUGcGCGCCGGCCu -3'
miRNA:   3'- uauuUCa-CGCA---CGGCAC-CGUGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 76698 0.72 0.640642
Target:  5'- --cGGGUccGUGUaGCgGUGGCACCGGCg -3'
miRNA:   3'- uauUUCA--CGCA-CGgCACCGUGGCCGg -5'
13980 5' -56.7 NC_003521.1 + 389 0.72 0.680383
Target:  5'- --uGAGUGUGUGC--UGGCGCgCGGCUg -3'
miRNA:   3'- uauUUCACGCACGgcACCGUG-GCCGG- -5'
13980 5' -56.7 NC_003521.1 + 32401 0.71 0.690244
Target:  5'- ---cGG-GCGUGCgacacagcagccCGUGGCGCaCGGCCu -3'
miRNA:   3'- uauuUCaCGCACG------------GCACCGUG-GCCGG- -5'
13980 5' -56.7 NC_003521.1 + 123892 0.71 0.70982
Target:  5'- -gGAAGcugucGCGUGCUGUcGGCGCgCGGCg -3'
miRNA:   3'- uaUUUCa----CGCACGGCA-CCGUG-GCCGg -5'
13980 5' -56.7 NC_003521.1 + 166451 0.71 0.738694
Target:  5'- -cGAGG-GCGaGCCGUcgccGCACUGGCCg -3'
miRNA:   3'- uaUUUCaCGCaCGGCAc---CGUGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.