miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13980 5' -56.7 NC_003521.1 + 166228 0.67 0.912521
Target:  5'- -cGAGGcGCGccgGCCGcgGGaCGCCGcGCCg -3'
miRNA:   3'- uaUUUCaCGCa--CGGCa-CC-GUGGC-CGG- -5'
13980 5' -56.7 NC_003521.1 + 99002 0.67 0.912521
Target:  5'- -gGAGGUaccGCG-GUCGUcuuguagacgauGGCGCCGGCUc -3'
miRNA:   3'- uaUUUCA---CGCaCGGCA------------CCGUGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 102581 0.67 0.912521
Target:  5'- -aGAAcUGCGUcUCGgggcUGGCGCUGGCCa -3'
miRNA:   3'- uaUUUcACGCAcGGC----ACCGUGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 57606 0.67 0.912521
Target:  5'- --cGAGUcaGCGUGCCGUcGCGCUccaGGCa -3'
miRNA:   3'- uauUUCA--CGCACGGCAcCGUGG---CCGg -5'
13980 5' -56.7 NC_003521.1 + 73127 0.67 0.912521
Target:  5'- -gGAGGUGC-UGCaCGgcgggGGCAgCGGCg -3'
miRNA:   3'- uaUUUCACGcACG-GCa----CCGUgGCCGg -5'
13980 5' -56.7 NC_003521.1 + 111566 0.67 0.912521
Target:  5'- -cGAGGUGCGgcugaGCCGgcgGGUuCCGGaCUg -3'
miRNA:   3'- uaUUUCACGCa----CGGCa--CCGuGGCC-GG- -5'
13980 5' -56.7 NC_003521.1 + 184616 0.67 0.911942
Target:  5'- aGUAucGUGCGUGCgGUacagaccugcgccGuCACCGGCUu -3'
miRNA:   3'- -UAUuuCACGCACGgCA-------------CcGUGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 58970 0.67 0.906632
Target:  5'- -cGAAGaaGCGcGCCGUcaGGCACUGGUg -3'
miRNA:   3'- uaUUUCa-CGCaCGGCA--CCGUGGCCGg -5'
13980 5' -56.7 NC_003521.1 + 213458 0.67 0.906632
Target:  5'- uUGAAG-GCGUcGCaCGUcaugacGGCGCCGGUg -3'
miRNA:   3'- uAUUUCaCGCA-CG-GCA------CCGUGGCCGg -5'
13980 5' -56.7 NC_003521.1 + 88060 0.67 0.906632
Target:  5'- gAUGAGGUcGCGgugGUCGgcGGCGCCcgugaccacgGGCCa -3'
miRNA:   3'- -UAUUUCA-CGCa--CGGCa-CCGUGG----------CCGG- -5'
13980 5' -56.7 NC_003521.1 + 127827 0.67 0.906632
Target:  5'- -gAAGGUGCccggGUGguaGUGGCGCCcGCCg -3'
miRNA:   3'- uaUUUCACG----CACgg-CACCGUGGcCGG- -5'
13980 5' -56.7 NC_003521.1 + 172107 0.67 0.906632
Target:  5'- ----cGUGCGggcgGCCGacGGCGCCacGGUCa -3'
miRNA:   3'- uauuuCACGCa---CGGCa-CCGUGG--CCGG- -5'
13980 5' -56.7 NC_003521.1 + 117388 0.67 0.906632
Target:  5'- --cAGGUGCGgcacgcGCUGUgcuGGCACCGGgUg -3'
miRNA:   3'- uauUUCACGCa-----CGGCA---CCGUGGCCgG- -5'
13980 5' -56.7 NC_003521.1 + 218372 0.67 0.902991
Target:  5'- cGUGAgccAG-GCGUGCCGcgugaagcgcgggcGGUACuCGGCCa -3'
miRNA:   3'- -UAUU---UCaCGCACGGCa-------------CCGUG-GCCGG- -5'
13980 5' -56.7 NC_003521.1 + 122539 0.67 0.90052
Target:  5'- gGUGGuAGUGCugcugcuaccGCCGcUGGUGCCGGCUa -3'
miRNA:   3'- -UAUU-UCACGca--------CGGC-ACCGUGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 109602 0.67 0.90052
Target:  5'- ----cGUcGCGacGCUGUcucuGGCGCCGGCCc -3'
miRNA:   3'- uauuuCA-CGCa-CGGCA----CCGUGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 74566 0.67 0.90052
Target:  5'- ------cGCGUGcCCGUGaGCA-CGGCCc -3'
miRNA:   3'- uauuucaCGCAC-GGCAC-CGUgGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 165375 0.67 0.90052
Target:  5'- ---uAGUGCGUGUCcaGGUACgcguUGGCCa -3'
miRNA:   3'- uauuUCACGCACGGcaCCGUG----GCCGG- -5'
13980 5' -56.7 NC_003521.1 + 165990 0.67 0.90052
Target:  5'- cGUGAGGcGCGggacGCCGUcGCGCuCGGCg -3'
miRNA:   3'- -UAUUUCaCGCa---CGGCAcCGUG-GCCGg -5'
13980 5' -56.7 NC_003521.1 + 125449 0.67 0.899896
Target:  5'- -cGAAGUGCGUcucggaCGUGGCGaacgcgcCCGcGCCg -3'
miRNA:   3'- uaUUUCACGCAcg----GCACCGU-------GGC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.