miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13980 5' -56.7 NC_003521.1 + 148423 0.66 0.933818
Target:  5'- ---uGGUGCGgGCgGccGCGCCGGCg -3'
miRNA:   3'- uauuUCACGCaCGgCacCGUGGCCGg -5'
13980 5' -56.7 NC_003521.1 + 155398 0.66 0.928834
Target:  5'- -cGAGGccgGCGggggGCUG-GGCACCggaGGCCu -3'
miRNA:   3'- uaUUUCa--CGCa---CGGCaCCGUGG---CCGG- -5'
13980 5' -56.7 NC_003521.1 + 209864 0.66 0.928834
Target:  5'- -----cUGCGUGCCGa-GCGCCuGGCUu -3'
miRNA:   3'- uauuucACGCACGGCacCGUGG-CCGG- -5'
13980 5' -56.7 NC_003521.1 + 36181 0.66 0.928834
Target:  5'- ------gGCGUGCCcacGCACCuGGCCg -3'
miRNA:   3'- uauuucaCGCACGGcacCGUGG-CCGG- -5'
13980 5' -56.7 NC_003521.1 + 139585 0.66 0.928834
Target:  5'- --cAGGU-CuUGCCGUGGCGCCgcGGCa -3'
miRNA:   3'- uauUUCAcGcACGGCACCGUGG--CCGg -5'
13980 5' -56.7 NC_003521.1 + 168451 0.66 0.928834
Target:  5'- cGUGAAGaGCGUGauGgGGCGCUGGUg -3'
miRNA:   3'- -UAUUUCaCGCACggCaCCGUGGCCGg -5'
13980 5' -56.7 NC_003521.1 + 186777 0.66 0.928834
Target:  5'- -cGGAGgcgGCG-GUgGUGGCGgCGGCg -3'
miRNA:   3'- uaUUUCa--CGCaCGgCACCGUgGCCGg -5'
13980 5' -56.7 NC_003521.1 + 139857 0.66 0.928834
Target:  5'- ----cGUGCGcGCCG-GGCA-CGGCg -3'
miRNA:   3'- uauuuCACGCaCGGCaCCGUgGCCGg -5'
13980 5' -56.7 NC_003521.1 + 153336 0.66 0.923622
Target:  5'- ----cGUGgaUGUGCUG-GGCACCuucGGCCg -3'
miRNA:   3'- uauuuCAC--GCACGGCaCCGUGG---CCGG- -5'
13980 5' -56.7 NC_003521.1 + 104793 0.66 0.923622
Target:  5'- --cAGGUGCGUGCgGaaGCACCGcGUg -3'
miRNA:   3'- uauUUCACGCACGgCacCGUGGC-CGg -5'
13980 5' -56.7 NC_003521.1 + 98818 0.66 0.923622
Target:  5'- --cGAG-GCGUugcaGCUGcuUGGCGCgGGCCa -3'
miRNA:   3'- uauUUCaCGCA----CGGC--ACCGUGgCCGG- -5'
13980 5' -56.7 NC_003521.1 + 226068 0.67 0.918185
Target:  5'- -cGAAG-GCGcGCCccGGCcgcgGCCGGCCc -3'
miRNA:   3'- uaUUUCaCGCaCGGcaCCG----UGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 200244 0.67 0.918185
Target:  5'- --cGAGUGUGgcgcguguuUGCCGUGGCcgggAUCGGUg -3'
miRNA:   3'- uauUUCACGC---------ACGGCACCG----UGGCCGg -5'
13980 5' -56.7 NC_003521.1 + 72974 0.67 0.918185
Target:  5'- cAUGAAGaaGCG-GCCGcggggGGC-CUGGCCg -3'
miRNA:   3'- -UAUUUCa-CGCaCGGCa----CCGuGGCCGG- -5'
13980 5' -56.7 NC_003521.1 + 240565 0.67 0.918185
Target:  5'- --cGAGUGUGgcgcguguuUGCCGUGGCcgggAUCGGUg -3'
miRNA:   3'- uauUUCACGC---------ACGGCACCG----UGGCCGg -5'
13980 5' -56.7 NC_003521.1 + 16 0.67 0.918185
Target:  5'- --cGAGUGUGgcgcguguuUGCCGUGGCcgggAUCGGUg -3'
miRNA:   3'- uauUUCACGC---------ACGGCACCG----UGGCCGg -5'
13980 5' -56.7 NC_003521.1 + 197261 0.67 0.918185
Target:  5'- ---cGGUGCuUGaCGcGGCGCCGGCg -3'
miRNA:   3'- uauuUCACGcACgGCaCCGUGGCCGg -5'
13980 5' -56.7 NC_003521.1 + 128032 0.67 0.912521
Target:  5'- -cAGAGcGCGUGcCCGUaggcggccagcaGGCACauggCGGCCu -3'
miRNA:   3'- uaUUUCaCGCAC-GGCA------------CCGUG----GCCGG- -5'
13980 5' -56.7 NC_003521.1 + 166228 0.67 0.912521
Target:  5'- -cGAGGcGCGccgGCCGcgGGaCGCCGcGCCg -3'
miRNA:   3'- uaUUUCaCGCa--CGGCa-CC-GUGGC-CGG- -5'
13980 5' -56.7 NC_003521.1 + 102581 0.67 0.912521
Target:  5'- -aGAAcUGCGUcUCGgggcUGGCGCUGGCCa -3'
miRNA:   3'- uaUUUcACGCAcGGC----ACCGUGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.