miRNA display CGI


Results 41 - 60 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13981 5' -60.1 NC_003521.1 + 194189 0.66 0.86366
Target:  5'- cCGCCGCCgacgCCGUCuaCCG-C-CUGGCUg -3'
miRNA:   3'- -GCGGUGGa---GGCAGc-GGCaGcGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 144026 0.66 0.86366
Target:  5'- gCGCgAUCgugcCCGUagCGCCGcCGCUGcuGCCg -3'
miRNA:   3'- -GCGgUGGa---GGCA--GCGGCaGCGAC--UGG- -5'
13981 5' -60.1 NC_003521.1 + 57401 0.66 0.86366
Target:  5'- gCGCCACagcgCCGU-GCgGUCGCccACCg -3'
miRNA:   3'- -GCGGUGga--GGCAgCGgCAGCGacUGG- -5'
13981 5' -60.1 NC_003521.1 + 197397 0.66 0.86366
Target:  5'- cCGCCGCCUCC-UCGUCGggcaCGCa---- -3'
miRNA:   3'- -GCGGUGGAGGcAGCGGCa---GCGacugg -5'
13981 5' -60.1 NC_003521.1 + 53503 0.66 0.86366
Target:  5'- gGCCGCUgCUG-CGgCGUCGCagcGGCCg -3'
miRNA:   3'- gCGGUGGaGGCaGCgGCAGCGa--CUGG- -5'
13981 5' -60.1 NC_003521.1 + 178529 0.66 0.86366
Target:  5'- uGCaCAUCUcguaCCGcgUGCCGUCGUUGAUg -3'
miRNA:   3'- gCG-GUGGA----GGCa-GCGGCAGCGACUGg -5'
13981 5' -60.1 NC_003521.1 + 140243 0.66 0.86366
Target:  5'- gGCUcCCUCCG-CGUCGUCGUccuCCu -3'
miRNA:   3'- gCGGuGGAGGCaGCGGCAGCGacuGG- -5'
13981 5' -60.1 NC_003521.1 + 141630 0.66 0.86366
Target:  5'- gCGCCGCggCCGUCaCCGaCG-UGACCc -3'
miRNA:   3'- -GCGGUGgaGGCAGcGGCaGCgACUGG- -5'
13981 5' -60.1 NC_003521.1 + 24827 0.66 0.86366
Target:  5'- cCGUCAgUCUCUG-CGUgG-CGCUGGCCg -3'
miRNA:   3'- -GCGGU-GGAGGCaGCGgCaGCGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 76598 0.66 0.86366
Target:  5'- aGCCuCCaCCGUCcaGCCGcCGCU-ACCa -3'
miRNA:   3'- gCGGuGGaGGCAG--CGGCaGCGAcUGG- -5'
13981 5' -60.1 NC_003521.1 + 45294 0.66 0.86366
Target:  5'- gCGCCGCUgggCCaggaGCCGgagcccgaGCUGGCCg -3'
miRNA:   3'- -GCGGUGGa--GGcag-CGGCag------CGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 73239 0.66 0.86366
Target:  5'- gCGCCGCuCUCCaUCGacaCG-CGCUGcaACCu -3'
miRNA:   3'- -GCGGUG-GAGGcAGCg--GCaGCGAC--UGG- -5'
13981 5' -60.1 NC_003521.1 + 55479 0.66 0.861542
Target:  5'- gCGCCGCCUugCCGUCcuccuggugcuccaGCCaGgcguaGUUGACCa -3'
miRNA:   3'- -GCGGUGGA--GGCAG--------------CGG-Cag---CGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 216351 0.66 0.860832
Target:  5'- gGCCACCgagggugugaggcCCGUgGuCCG-CGCgGACCu -3'
miRNA:   3'- gCGGUGGa------------GGCAgC-GGCaGCGaCUGG- -5'
13981 5' -60.1 NC_003521.1 + 154423 0.66 0.856538
Target:  5'- gCGCguCCcCCG-CGUCGacCGCUGGCCc -3'
miRNA:   3'- -GCGguGGaGGCaGCGGCa-GCGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 46244 0.66 0.856538
Target:  5'- uCGCacgGCCUCgaCGUCGCCcUCGgUGGCg -3'
miRNA:   3'- -GCGg--UGGAG--GCAGCGGcAGCgACUGg -5'
13981 5' -60.1 NC_003521.1 + 160286 0.66 0.856538
Target:  5'- aGCCGUCgucgUCGuacUCGUCGUCGCUG-CCg -3'
miRNA:   3'- gCGGUGGa---GGC---AGCGGCAGCGACuGG- -5'
13981 5' -60.1 NC_003521.1 + 184919 0.66 0.856538
Target:  5'- uGCCGCCgCCGUCGgaggGUCgGC-GACCg -3'
miRNA:   3'- gCGGUGGaGGCAGCgg--CAG-CGaCUGG- -5'
13981 5' -60.1 NC_003521.1 + 138038 0.66 0.856537
Target:  5'- gGCgGCCgCCGgCGCCGUcaucgcgcagcCGCUG-CCg -3'
miRNA:   3'- gCGgUGGaGGCaGCGGCA-----------GCGACuGG- -5'
13981 5' -60.1 NC_003521.1 + 220926 0.66 0.856537
Target:  5'- aGCCGCUcCCGcaCGCCGUUGUcgUGAUg -3'
miRNA:   3'- gCGGUGGaGGCa-GCGGCAGCG--ACUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.