miRNA display CGI


Results 21 - 40 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13981 5' -60.1 NC_003521.1 + 79605 0.66 0.877359
Target:  5'- cCGCCGCCaUCGaacUUGCCGggGC-GACCg -3'
miRNA:   3'- -GCGGUGGaGGC---AGCGGCagCGaCUGG- -5'
13981 5' -60.1 NC_003521.1 + 164073 0.66 0.877359
Target:  5'- gGUCGCCUCgGagGUCGUCGUcauGCCu -3'
miRNA:   3'- gCGGUGGAGgCagCGGCAGCGac-UGG- -5'
13981 5' -60.1 NC_003521.1 + 214789 0.66 0.877359
Target:  5'- uCGCCGCCgUCCucuucacCGCCGUCGggcGCCg -3'
miRNA:   3'- -GCGGUGG-AGGca-----GCGGCAGCgacUGG- -5'
13981 5' -60.1 NC_003521.1 + 195846 0.66 0.877359
Target:  5'- -cCCGCCUCUGgcgucagCGCUGUCGCcucgcucucggGACUg -3'
miRNA:   3'- gcGGUGGAGGCa------GCGGCAGCGa----------CUGG- -5'
13981 5' -60.1 NC_003521.1 + 113747 0.66 0.877359
Target:  5'- gGCCGCCUCuCGUCGgUGgCcCUGcCCg -3'
miRNA:   3'- gCGGUGGAG-GCAGCgGCaGcGACuGG- -5'
13981 5' -60.1 NC_003521.1 + 103577 0.66 0.876692
Target:  5'- cCGCUGCCgCCGUCggccccgGCCGgugCGCggggGAUCu -3'
miRNA:   3'- -GCGGUGGaGGCAG-------CGGCa--GCGa---CUGG- -5'
13981 5' -60.1 NC_003521.1 + 89858 0.66 0.873327
Target:  5'- gGCCGCCagcgCCG-CGUCG-CGCgacugcacgaugaucUGACCg -3'
miRNA:   3'- gCGGUGGa---GGCaGCGGCaGCG---------------ACUGG- -5'
13981 5' -60.1 NC_003521.1 + 219768 0.66 0.870602
Target:  5'- uGUCGCCUaCGUCGCCuUUGC-GACa -3'
miRNA:   3'- gCGGUGGAgGCAGCGGcAGCGaCUGg -5'
13981 5' -60.1 NC_003521.1 + 183904 0.66 0.870602
Target:  5'- aGCCACggCCGUCaCgG-CGCUGuACCg -3'
miRNA:   3'- gCGGUGgaGGCAGcGgCaGCGAC-UGG- -5'
13981 5' -60.1 NC_003521.1 + 45110 0.66 0.870602
Target:  5'- cCGCUACCUgCGgCGCCGUaUGUUcGugCa -3'
miRNA:   3'- -GCGGUGGAgGCaGCGGCA-GCGA-CugG- -5'
13981 5' -60.1 NC_003521.1 + 153940 0.66 0.870602
Target:  5'- gGCCACCcgCCG-CGCCGUCaugGugUc -3'
miRNA:   3'- gCGGUGGa-GGCaGCGGCAGcgaCugG- -5'
13981 5' -60.1 NC_003521.1 + 26000 0.66 0.870602
Target:  5'- aGCauggaACCgCCGUCGCCG-CGCccGGCg -3'
miRNA:   3'- gCGg----UGGaGGCAGCGGCaGCGa-CUGg -5'
13981 5' -60.1 NC_003521.1 + 17773 0.66 0.870602
Target:  5'- uGCUgugacgaugACCUggaggCCGUCGgCGU-GCUGGCCg -3'
miRNA:   3'- gCGG---------UGGA-----GGCAGCgGCAgCGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 205932 0.66 0.870602
Target:  5'- gGgCGCCUgCGucUCGCUGg-GCUGGCCc -3'
miRNA:   3'- gCgGUGGAgGC--AGCGGCagCGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 139312 0.66 0.870602
Target:  5'- gCGCCugC-UgGUCgGCCG-CGuCUGGCCg -3'
miRNA:   3'- -GCGGugGaGgCAG-CGGCaGC-GACUGG- -5'
13981 5' -60.1 NC_003521.1 + 178888 0.66 0.870602
Target:  5'- cCGCCugUUgCGUcuugagauaCGCCGUgaaCGCcGACCa -3'
miRNA:   3'- -GCGGugGAgGCA---------GCGGCA---GCGaCUGG- -5'
13981 5' -60.1 NC_003521.1 + 80318 0.66 0.870602
Target:  5'- cCGCCcccuCCUcCCGcCGCgGUCuGCUGuguCCg -3'
miRNA:   3'- -GCGGu---GGA-GGCaGCGgCAG-CGACu--GG- -5'
13981 5' -60.1 NC_003521.1 + 213757 0.66 0.870602
Target:  5'- gCGCUACCUgggcUCGUCGCUGgugaaaCGCUacuuucGGCCc -3'
miRNA:   3'- -GCGGUGGA----GGCAGCGGCa-----GCGA------CUGG- -5'
13981 5' -60.1 NC_003521.1 + 49833 0.66 0.870602
Target:  5'- aCGuCCACCUgCGcCuGCUGcCGCUcGGCCu -3'
miRNA:   3'- -GC-GGUGGAgGCaG-CGGCaGCGA-CUGG- -5'
13981 5' -60.1 NC_003521.1 + 164605 0.66 0.864363
Target:  5'- aCGCCACCggCCGcCGCCacucauaccaccacCGC-GACCg -3'
miRNA:   3'- -GCGGUGGa-GGCaGCGGca------------GCGaCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.