miRNA display CGI


Results 21 - 40 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13981 5' -60.1 NC_003521.1 + 127043 0.76 0.351176
Target:  5'- cCGUCGCgCUggCCGUCGCCGUCGUcGACg -3'
miRNA:   3'- -GCGGUG-GA--GGCAGCGGCAGCGaCUGg -5'
13981 5' -60.1 NC_003521.1 + 117390 0.76 0.357759
Target:  5'- aCGgCGCCUCCGUccuauccCGCCGUCGgUG-CCg -3'
miRNA:   3'- -GCgGUGGAGGCA-------GCGGCAGCgACuGG- -5'
13981 5' -60.1 NC_003521.1 + 71381 0.76 0.365921
Target:  5'- cCGCCGCCgCCGaCGCCGUCGUccgcgUGAgCg -3'
miRNA:   3'- -GCGGUGGaGGCaGCGGCAGCG-----ACUgG- -5'
13981 5' -60.1 NC_003521.1 + 22186 0.76 0.365921
Target:  5'- gCGCCGCCggCCGUggccgcuuacCGCCGcgCGCUGGCg -3'
miRNA:   3'- -GCGGUGGa-GGCA----------GCGGCa-GCGACUGg -5'
13981 5' -60.1 NC_003521.1 + 164480 0.76 0.365921
Target:  5'- cCGCCGCCgcagCCGUCaCCGUCGCcu-CCg -3'
miRNA:   3'- -GCGGUGGa---GGCAGcGGCAGCGacuGG- -5'
13981 5' -60.1 NC_003521.1 + 97415 0.75 0.394305
Target:  5'- uCGCCGucgguaccaucuccCCUCCGUCuccuCCGUCGCUuucGACCg -3'
miRNA:   3'- -GCGGU--------------GGAGGCAGc---GGCAGCGA---CUGG- -5'
13981 5' -60.1 NC_003521.1 + 124145 0.75 0.396668
Target:  5'- cCGCUGCCUCCGcCGCCGcUGCcGugCa -3'
miRNA:   3'- -GCGGUGGAGGCaGCGGCaGCGaCugG- -5'
13981 5' -60.1 NC_003521.1 + 188331 0.75 0.40461
Target:  5'- cCGcCCACCUugucgUCGUCGCCGUUGCUucGACg -3'
miRNA:   3'- -GC-GGUGGA-----GGCAGCGGCAGCGA--CUGg -5'
13981 5' -60.1 NC_003521.1 + 24706 0.75 0.40461
Target:  5'- cCGCgGCCUCCG-CGCCG-CGCUcaACCa -3'
miRNA:   3'- -GCGgUGGAGGCaGCGGCaGCGAc-UGG- -5'
13981 5' -60.1 NC_003521.1 + 22739 0.75 0.412653
Target:  5'- uCGUCACCggcgCCGcCGCC-UCGCUGugCu -3'
miRNA:   3'- -GCGGUGGa---GGCaGCGGcAGCGACugG- -5'
13981 5' -60.1 NC_003521.1 + 235296 0.75 0.412653
Target:  5'- gCGCCGgCUgCCGUCaCCGUCGCUGcuGCUa -3'
miRNA:   3'- -GCGGUgGA-GGCAGcGGCAGCGAC--UGG- -5'
13981 5' -60.1 NC_003521.1 + 26808 0.74 0.437359
Target:  5'- aCGCCACC-CUGagCGCCGUCGUgucACCg -3'
miRNA:   3'- -GCGGUGGaGGCa-GCGGCAGCGac-UGG- -5'
13981 5' -60.1 NC_003521.1 + 153067 0.74 0.437359
Target:  5'- gGCCuCCUCCGcCGCCGggGCccgGGCCg -3'
miRNA:   3'- gCGGuGGAGGCaGCGGCagCGa--CUGG- -5'
13981 5' -60.1 NC_003521.1 + 129638 0.74 0.437359
Target:  5'- aGcCCACCgUCCGcggCGCCGUCGCcggggcGGCCg -3'
miRNA:   3'- gC-GGUGG-AGGCa--GCGGCAGCGa-----CUGG- -5'
13981 5' -60.1 NC_003521.1 + 142153 0.74 0.44409
Target:  5'- aCGCCACCuaaggucUCCGcgcaagcUCGCCGUCGUcGACg -3'
miRNA:   3'- -GCGGUGG-------AGGC-------AGCGGCAGCGaCUGg -5'
13981 5' -60.1 NC_003521.1 + 109580 0.74 0.445782
Target:  5'- gCGCCGCUcCCGucggcaUCGCCGUCGC-GACg -3'
miRNA:   3'- -GCGGUGGaGGC------AGCGGCAGCGaCUGg -5'
13981 5' -60.1 NC_003521.1 + 126957 0.74 0.462894
Target:  5'- uGCCGCCgcggaacCCG-CGCCGUCGUcgccGGCCg -3'
miRNA:   3'- gCGGUGGa------GGCaGCGGCAGCGa---CUGG- -5'
13981 5' -60.1 NC_003521.1 + 233085 0.74 0.462894
Target:  5'- cCGCCGCCUCCGcCGCuCG-CGCcGcCCu -3'
miRNA:   3'- -GCGGUGGAGGCaGCG-GCaGCGaCuGG- -5'
13981 5' -60.1 NC_003521.1 + 154121 0.74 0.462894
Target:  5'- -aCCGCCUCguCGUCGCCGcCGC-GGCCc -3'
miRNA:   3'- gcGGUGGAG--GCAGCGGCaGCGaCUGG- -5'
13981 5' -60.1 NC_003521.1 + 150273 0.74 0.462894
Target:  5'- gGCCgGCCUCuCGUgggUGCUGUCGCggGGCCa -3'
miRNA:   3'- gCGG-UGGAG-GCA---GCGGCAGCGa-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.