miRNA display CGI


Results 1 - 20 of 355 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13981 5' -60.1 NC_003521.1 + 204821 1.12 0.001611
Target:  5'- cCGCCACCUCCGUCGCCGUCGCUGACCa -3'
miRNA:   3'- -GCGGUGGAGGCAGCGGCAGCGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 122826 0.86 0.081191
Target:  5'- aCGCCGCCgcuaCCGUCGUCGUC-CUGACCg -3'
miRNA:   3'- -GCGGUGGa---GGCAGCGGCAGcGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 22383 0.85 0.103895
Target:  5'- gGCCAuguCCUCCGUggugccgcCGCUGUCGCUGGCCa -3'
miRNA:   3'- gCGGU---GGAGGCA--------GCGGCAGCGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 94171 0.82 0.152947
Target:  5'- uGCCGuCCUCC-UCGCCGUCGUcgUGGCCg -3'
miRNA:   3'- gCGGU-GGAGGcAGCGGCAGCG--ACUGG- -5'
13981 5' -60.1 NC_003521.1 + 168948 0.82 0.164226
Target:  5'- gGCCGCCgCUGUCGCCGUCGCUc-CCg -3'
miRNA:   3'- gCGGUGGaGGCAGCGGCAGCGAcuGG- -5'
13981 5' -60.1 NC_003521.1 + 210888 0.81 0.180426
Target:  5'- aCGUCGCCUCgGUgGCCGUCGCcaGGCCc -3'
miRNA:   3'- -GCGGUGGAGgCAgCGGCAGCGa-CUGG- -5'
13981 5' -60.1 NC_003521.1 + 209739 0.81 0.184691
Target:  5'- gGCCGCCgCCGUCGUCGcUGUUGGCCg -3'
miRNA:   3'- gCGGUGGaGGCAGCGGCaGCGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 72282 0.8 0.207375
Target:  5'- cCGCCAgCgCCGcCGCCG-CGCUGGCCg -3'
miRNA:   3'- -GCGGUgGaGGCaGCGGCaGCGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 105578 0.78 0.254263
Target:  5'- cCGCCGCCgugUCGUCGCCGcCGCcGGCg -3'
miRNA:   3'- -GCGGUGGa--GGCAGCGGCaGCGaCUGg -5'
13981 5' -60.1 NC_003521.1 + 11551 0.78 0.259979
Target:  5'- uCGCUacGCCUCCGgCGCCGUCGUgcGCCg -3'
miRNA:   3'- -GCGG--UGGAGGCaGCGGCAGCGacUGG- -5'
13981 5' -60.1 NC_003521.1 + 197276 0.78 0.277755
Target:  5'- gGCCGCCUCUGUCGCggCGUCucucgGCUcGGCCg -3'
miRNA:   3'- gCGGUGGAGGCAGCG--GCAG-----CGA-CUGG- -5'
13981 5' -60.1 NC_003521.1 + 167971 0.78 0.277755
Target:  5'- cCGCCguGCCUaCCGUCGCCG-CGCccaGGCCg -3'
miRNA:   3'- -GCGG--UGGA-GGCAGCGGCaGCGa--CUGG- -5'
13981 5' -60.1 NC_003521.1 + 44101 0.78 0.277755
Target:  5'- cCGCCACCaCCGUCGCCGcCGgUGAa- -3'
miRNA:   3'- -GCGGUGGaGGCAGCGGCaGCgACUgg -5'
13981 5' -60.1 NC_003521.1 + 167652 0.77 0.302947
Target:  5'- gGCCAgCUCCG-CGCCagGUCGCaGGCCg -3'
miRNA:   3'- gCGGUgGAGGCaGCGG--CAGCGaCUGG- -5'
13981 5' -60.1 NC_003521.1 + 181220 0.77 0.302947
Target:  5'- uGCgAUggCCGaUCGCCGUCGUUGACCa -3'
miRNA:   3'- gCGgUGgaGGC-AGCGGCAGCGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 118308 0.77 0.309513
Target:  5'- cCGCCGCCggccugcCCGcCGCCG-CGUUGGCCc -3'
miRNA:   3'- -GCGGUGGa------GGCaGCGGCaGCGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 117256 0.76 0.32986
Target:  5'- cCGCCGCCaucCCGccacCGCCGUCGUcGGCCg -3'
miRNA:   3'- -GCGGUGGa--GGCa---GCGGCAGCGaCUGG- -5'
13981 5' -60.1 NC_003521.1 + 190032 0.76 0.343963
Target:  5'- uGCCAUCaCCGUCGCCGaUCGaccagGACCg -3'
miRNA:   3'- gCGGUGGaGGCAGCGGC-AGCga---CUGG- -5'
13981 5' -60.1 NC_003521.1 + 93148 0.76 0.343963
Target:  5'- aGaCCACCUCCG--GCCGUCGCUcGACg -3'
miRNA:   3'- gC-GGUGGAGGCagCGGCAGCGA-CUGg -5'
13981 5' -60.1 NC_003521.1 + 127043 0.76 0.351176
Target:  5'- cCGUCGCgCUggCCGUCGCCGUCGUcGACg -3'
miRNA:   3'- -GCGGUG-GA--GGCAGCGGCAGCGaCUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.