miRNA display CGI


Results 1 - 20 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13981 5' -60.1 NC_003521.1 + 73239 0.66 0.86366
Target:  5'- gCGCCGCuCUCCaUCGacaCG-CGCUGcaACCu -3'
miRNA:   3'- -GCGGUG-GAGGcAGCg--GCaGCGAC--UGG- -5'
13981 5' -60.1 NC_003521.1 + 196811 0.66 0.849239
Target:  5'- aGUCAUCgaCGUCGCCGgagaCGCUGAa- -3'
miRNA:   3'- gCGGUGGagGCAGCGGCa---GCGACUgg -5'
13981 5' -60.1 NC_003521.1 + 45110 0.66 0.870602
Target:  5'- cCGCUACCUgCGgCGCCGUaUGUUcGugCa -3'
miRNA:   3'- -GCGGUGGAgGCaGCGGCA-GCGA-CugG- -5'
13981 5' -60.1 NC_003521.1 + 160286 0.66 0.856538
Target:  5'- aGCCGUCgucgUCGuacUCGUCGUCGCUG-CCg -3'
miRNA:   3'- gCGGUGGa---GGC---AGCGGCAGCGACuGG- -5'
13981 5' -60.1 NC_003521.1 + 57401 0.66 0.86366
Target:  5'- gCGCCACagcgCCGU-GCgGUCGCccACCg -3'
miRNA:   3'- -GCGGUGga--GGCAgCGgCAGCGacUGG- -5'
13981 5' -60.1 NC_003521.1 + 154423 0.66 0.856538
Target:  5'- gCGCguCCcCCG-CGUCGacCGCUGGCCc -3'
miRNA:   3'- -GCGguGGaGGCaGCGGCa-GCGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 141630 0.66 0.86366
Target:  5'- gCGCCGCggCCGUCaCCGaCG-UGACCc -3'
miRNA:   3'- -GCGGUGgaGGCAGcGGCaGCgACUGG- -5'
13981 5' -60.1 NC_003521.1 + 45294 0.66 0.86366
Target:  5'- gCGCCGCUgggCCaggaGCCGgagcccgaGCUGGCCg -3'
miRNA:   3'- -GCGGUGGa--GGcag-CGGCag------CGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 55479 0.66 0.861542
Target:  5'- gCGCCGCCUugCCGUCcuccuggugcuccaGCCaGgcguaGUUGACCa -3'
miRNA:   3'- -GCGGUGGA--GGCAG--------------CGG-Cag---CGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 178529 0.66 0.86366
Target:  5'- uGCaCAUCUcguaCCGcgUGCCGUCGUUGAUg -3'
miRNA:   3'- gCG-GUGGA----GGCa-GCGGCAGCGACUGg -5'
13981 5' -60.1 NC_003521.1 + 219768 0.66 0.870602
Target:  5'- uGUCGCCUaCGUCGCCuUUGC-GACa -3'
miRNA:   3'- gCGGUGGAgGCAGCGGcAGCGaCUGg -5'
13981 5' -60.1 NC_003521.1 + 46244 0.66 0.856538
Target:  5'- uCGCacgGCCUCgaCGUCGCCcUCGgUGGCg -3'
miRNA:   3'- -GCGg--UGGAG--GCAGCGGcAGCgACUGg -5'
13981 5' -60.1 NC_003521.1 + 140243 0.66 0.86366
Target:  5'- gGCUcCCUCCG-CGUCGUCGUccuCCu -3'
miRNA:   3'- gCGGuGGAGGCaGCGGCAGCGacuGG- -5'
13981 5' -60.1 NC_003521.1 + 53503 0.66 0.86366
Target:  5'- gGCCGCUgCUG-CGgCGUCGCagcGGCCg -3'
miRNA:   3'- gCGGUGGaGGCaGCgGCAGCGa--CUGG- -5'
13981 5' -60.1 NC_003521.1 + 236525 0.66 0.883926
Target:  5'- cCGCCGucCCUCUGccUUGUCGUCGUUcGGCg -3'
miRNA:   3'- -GCGGU--GGAGGC--AGCGGCAGCGA-CUGg -5'
13981 5' -60.1 NC_003521.1 + 184919 0.66 0.856538
Target:  5'- uGCCGCCgCCGUCGgaggGUCgGC-GACCg -3'
miRNA:   3'- gCGGUGGaGGCAGCgg--CAG-CGaCUGG- -5'
13981 5' -60.1 NC_003521.1 + 164605 0.66 0.864363
Target:  5'- aCGCCACCggCCGcCGCCacucauaccaccacCGC-GACCg -3'
miRNA:   3'- -GCGGUGGa-GGCaGCGGca------------GCGaCUGG- -5'
13981 5' -60.1 NC_003521.1 + 183904 0.66 0.870602
Target:  5'- aGCCACggCCGUCaCgG-CGCUGuACCg -3'
miRNA:   3'- gCGGUGgaGGCAGcGgCaGCGAC-UGG- -5'
13981 5' -60.1 NC_003521.1 + 37475 0.66 0.8485
Target:  5'- gGCCACCguggugCCGcagggcacccccaUCGCCa-CGCUGuACCa -3'
miRNA:   3'- gCGGUGGa-----GGC-------------AGCGGcaGCGAC-UGG- -5'
13981 5' -60.1 NC_003521.1 + 24827 0.66 0.86366
Target:  5'- cCGUCAgUCUCUG-CGUgG-CGCUGGCCg -3'
miRNA:   3'- -GCGGU-GGAGGCaGCGgCaGCGACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.