miRNA display CGI


Results 1 - 20 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13981 5' -60.1 NC_003521.1 + 150273 0.74 0.462894
Target:  5'- gGCCgGCCUCuCGUgggUGCUGUCGCggGGCCa -3'
miRNA:   3'- gCGG-UGGAG-GCA---GCGGCAGCGa-CUGG- -5'
13981 5' -60.1 NC_003521.1 + 117390 0.76 0.357759
Target:  5'- aCGgCGCCUCCGUccuauccCGCCGUCGgUG-CCg -3'
miRNA:   3'- -GCgGUGGAGGCA-------GCGGCAGCgACuGG- -5'
13981 5' -60.1 NC_003521.1 + 71381 0.76 0.365921
Target:  5'- cCGCCGCCgCCGaCGCCGUCGUccgcgUGAgCg -3'
miRNA:   3'- -GCGGUGGaGGCaGCGGCAGCG-----ACUgG- -5'
13981 5' -60.1 NC_003521.1 + 164480 0.76 0.365921
Target:  5'- cCGCCGCCgcagCCGUCaCCGUCGCcu-CCg -3'
miRNA:   3'- -GCGGUGGa---GGCAGcGGCAGCGacuGG- -5'
13981 5' -60.1 NC_003521.1 + 97415 0.75 0.394305
Target:  5'- uCGCCGucgguaccaucuccCCUCCGUCuccuCCGUCGCUuucGACCg -3'
miRNA:   3'- -GCGGU--------------GGAGGCAGc---GGCAGCGA---CUGG- -5'
13981 5' -60.1 NC_003521.1 + 124145 0.75 0.396668
Target:  5'- cCGCUGCCUCCGcCGCCGcUGCcGugCa -3'
miRNA:   3'- -GCGGUGGAGGCaGCGGCaGCGaCugG- -5'
13981 5' -60.1 NC_003521.1 + 153067 0.74 0.437359
Target:  5'- gGCCuCCUCCGcCGCCGggGCccgGGCCg -3'
miRNA:   3'- gCGGuGGAGGCaGCGGCagCGa--CUGG- -5'
13981 5' -60.1 NC_003521.1 + 142153 0.74 0.44409
Target:  5'- aCGCCACCuaaggucUCCGcgcaagcUCGCCGUCGUcGACg -3'
miRNA:   3'- -GCGGUGG-------AGGC-------AGCGGCAGCGaCUGg -5'
13981 5' -60.1 NC_003521.1 + 126957 0.74 0.462894
Target:  5'- uGCCGCCgcggaacCCG-CGCCGUCGUcgccGGCCg -3'
miRNA:   3'- gCGGUGGa------GGCaGCGGCAGCGa---CUGG- -5'
13981 5' -60.1 NC_003521.1 + 54167 0.76 0.351176
Target:  5'- cCGCCGCCUCCGccacCGCCG-CGC-GACg -3'
miRNA:   3'- -GCGGUGGAGGCa---GCGGCaGCGaCUGg -5'
13981 5' -60.1 NC_003521.1 + 127043 0.76 0.351176
Target:  5'- cCGUCGCgCUggCCGUCGCCGUCGUcGACg -3'
miRNA:   3'- -GCGGUG-GA--GGCAGCGGCAGCGaCUGg -5'
13981 5' -60.1 NC_003521.1 + 190032 0.76 0.343963
Target:  5'- uGCCAUCaCCGUCGCCGaUCGaccagGACCg -3'
miRNA:   3'- gCGGUGGaGGCAGCGGC-AGCga---CUGG- -5'
13981 5' -60.1 NC_003521.1 + 168948 0.82 0.164226
Target:  5'- gGCCGCCgCUGUCGCCGUCGCUc-CCg -3'
miRNA:   3'- gCGGUGGaGGCAGCGGCAGCGAcuGG- -5'
13981 5' -60.1 NC_003521.1 + 210888 0.81 0.180426
Target:  5'- aCGUCGCCUCgGUgGCCGUCGCcaGGCCc -3'
miRNA:   3'- -GCGGUGGAGgCAgCGGCAGCGa-CUGG- -5'
13981 5' -60.1 NC_003521.1 + 105578 0.78 0.254263
Target:  5'- cCGCCGCCgugUCGUCGCCGcCGCcGGCg -3'
miRNA:   3'- -GCGGUGGa--GGCAGCGGCaGCGaCUGg -5'
13981 5' -60.1 NC_003521.1 + 197276 0.78 0.277755
Target:  5'- gGCCGCCUCUGUCGCggCGUCucucgGCUcGGCCg -3'
miRNA:   3'- gCGGUGGAGGCAGCG--GCAG-----CGA-CUGG- -5'
13981 5' -60.1 NC_003521.1 + 181220 0.77 0.302947
Target:  5'- uGCgAUggCCGaUCGCCGUCGUUGACCa -3'
miRNA:   3'- gCGgUGgaGGC-AGCGGCAGCGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 118308 0.77 0.309513
Target:  5'- cCGCCGCCggccugcCCGcCGCCG-CGUUGGCCc -3'
miRNA:   3'- -GCGGUGGa------GGCaGCGGCaGCGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 117256 0.76 0.32986
Target:  5'- cCGCCGCCaucCCGccacCGCCGUCGUcGGCCg -3'
miRNA:   3'- -GCGGUGGa--GGCa---GCGGCAGCGaCUGG- -5'
13981 5' -60.1 NC_003521.1 + 93148 0.76 0.343963
Target:  5'- aGaCCACCUCCG--GCCGUCGCUcGACg -3'
miRNA:   3'- gC-GGUGGAGGCagCGGCAGCGA-CUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.