miRNA display CGI


Results 1 - 20 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13981 5' -60.1 NC_003521.1 + 204821 1.12 0.001611
Target:  5'- cCGCCACCUCCGUCGCCGUCGCUGACCa -3'
miRNA:   3'- -GCGGUGGAGGCAGCGGCAGCGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 110930 0.74 0.462894
Target:  5'- gGCCGCC-CCGUCGUCGUC-CUccuccuccccGGCCg -3'
miRNA:   3'- gCGGUGGaGGCAGCGGCAGcGA----------CUGG- -5'
13981 5' -60.1 NC_003521.1 + 76755 0.73 0.471579
Target:  5'- aCGaCgACCUCCGaggCGaCCGUCGCcgUGGCCg -3'
miRNA:   3'- -GC-GgUGGAGGCa--GC-GGCAGCG--ACUGG- -5'
13981 5' -60.1 NC_003521.1 + 236525 0.66 0.883926
Target:  5'- cCGCCGucCCUCUGccUUGUCGUCGUUcGGCg -3'
miRNA:   3'- -GCGGU--GGAGGC--AGCGGCAGCGA-CUGg -5'
13981 5' -60.1 NC_003521.1 + 72282 0.8 0.207375
Target:  5'- cCGCCAgCgCCGcCGCCG-CGCUGGCCg -3'
miRNA:   3'- -GCGGUgGaGGCaGCGGCaGCGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 11551 0.78 0.259979
Target:  5'- uCGCUacGCCUCCGgCGCCGUCGUgcGCCg -3'
miRNA:   3'- -GCGG--UGGAGGCaGCGGCAGCGacUGG- -5'
13981 5' -60.1 NC_003521.1 + 167971 0.78 0.277755
Target:  5'- cCGCCguGCCUaCCGUCGCCG-CGCccaGGCCg -3'
miRNA:   3'- -GCGG--UGGA-GGCAGCGGCaGCGa--CUGG- -5'
13981 5' -60.1 NC_003521.1 + 167652 0.77 0.302947
Target:  5'- gGCCAgCUCCG-CGCCagGUCGCaGGCCg -3'
miRNA:   3'- gCGGUgGAGGCaGCGG--CAGCGaCUGG- -5'
13981 5' -60.1 NC_003521.1 + 24706 0.75 0.40461
Target:  5'- cCGCgGCCUCCG-CGCCG-CGCUcaACCa -3'
miRNA:   3'- -GCGgUGGAGGCaGCGGCaGCGAc-UGG- -5'
13981 5' -60.1 NC_003521.1 + 109580 0.74 0.445782
Target:  5'- gCGCCGCUcCCGucggcaUCGCCGUCGC-GACg -3'
miRNA:   3'- -GCGGUGGaGGC------AGCGGCAGCGaCUGg -5'
13981 5' -60.1 NC_003521.1 + 235296 0.75 0.412653
Target:  5'- gCGCCGgCUgCCGUCaCCGUCGCUGcuGCUa -3'
miRNA:   3'- -GCGGUgGA-GGCAGcGGCAGCGAC--UGG- -5'
13981 5' -60.1 NC_003521.1 + 188331 0.75 0.40461
Target:  5'- cCGcCCACCUugucgUCGUCGCCGUUGCUucGACg -3'
miRNA:   3'- -GC-GGUGGA-----GGCAGCGGCAGCGA--CUGg -5'
13981 5' -60.1 NC_003521.1 + 22383 0.85 0.103895
Target:  5'- gGCCAuguCCUCCGUggugccgcCGCUGUCGCUGGCCa -3'
miRNA:   3'- gCGGU---GGAGGCA--------GCGGCAGCGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 129638 0.74 0.437359
Target:  5'- aGcCCACCgUCCGcggCGCCGUCGCcggggcGGCCg -3'
miRNA:   3'- gC-GGUGG-AGGCa--GCGGCAGCGa-----CUGG- -5'
13981 5' -60.1 NC_003521.1 + 94171 0.82 0.152947
Target:  5'- uGCCGuCCUCC-UCGCCGUCGUcgUGGCCg -3'
miRNA:   3'- gCGGU-GGAGGcAGCGGCAGCG--ACUGG- -5'
13981 5' -60.1 NC_003521.1 + 22186 0.76 0.365921
Target:  5'- gCGCCGCCggCCGUggccgcuuacCGCCGcgCGCUGGCg -3'
miRNA:   3'- -GCGGUGGa-GGCA----------GCGGCa-GCGACUGg -5'
13981 5' -60.1 NC_003521.1 + 26808 0.74 0.437359
Target:  5'- aCGCCACC-CUGagCGCCGUCGUgucACCg -3'
miRNA:   3'- -GCGGUGGaGGCa-GCGGCAGCGac-UGG- -5'
13981 5' -60.1 NC_003521.1 + 31265 0.74 0.462894
Target:  5'- cCGCCGCCaCCGUCGCCGccacccCGCcgGGCg -3'
miRNA:   3'- -GCGGUGGaGGCAGCGGCa-----GCGa-CUGg -5'
13981 5' -60.1 NC_003521.1 + 209739 0.81 0.184691
Target:  5'- gGCCGCCgCCGUCGUCGcUGUUGGCCg -3'
miRNA:   3'- gCGGUGGaGGCAGCGGCaGCGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 44101 0.78 0.277755
Target:  5'- cCGCCACCaCCGUCGCCGcCGgUGAa- -3'
miRNA:   3'- -GCGGUGGaGGCAGCGGCaGCgACUgg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.