Results 1 - 20 of 355 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13981 | 5' | -60.1 | NC_003521.1 | + | 204821 | 1.12 | 0.001611 |
Target: 5'- cCGCCACCUCCGUCGCCGUCGCUGACCa -3' miRNA: 3'- -GCGGUGGAGGCAGCGGCAGCGACUGG- -5' |
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13981 | 5' | -60.1 | NC_003521.1 | + | 110930 | 0.74 | 0.462894 |
Target: 5'- gGCCGCC-CCGUCGUCGUC-CUccuccuccccGGCCg -3' miRNA: 3'- gCGGUGGaGGCAGCGGCAGcGA----------CUGG- -5' |
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13981 | 5' | -60.1 | NC_003521.1 | + | 76755 | 0.73 | 0.471579 |
Target: 5'- aCGaCgACCUCCGaggCGaCCGUCGCcgUGGCCg -3' miRNA: 3'- -GC-GgUGGAGGCa--GC-GGCAGCG--ACUGG- -5' |
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13981 | 5' | -60.1 | NC_003521.1 | + | 236525 | 0.66 | 0.883926 |
Target: 5'- cCGCCGucCCUCUGccUUGUCGUCGUUcGGCg -3' miRNA: 3'- -GCGGU--GGAGGC--AGCGGCAGCGA-CUGg -5' |
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13981 | 5' | -60.1 | NC_003521.1 | + | 72282 | 0.8 | 0.207375 |
Target: 5'- cCGCCAgCgCCGcCGCCG-CGCUGGCCg -3' miRNA: 3'- -GCGGUgGaGGCaGCGGCaGCGACUGG- -5' |
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13981 | 5' | -60.1 | NC_003521.1 | + | 11551 | 0.78 | 0.259979 |
Target: 5'- uCGCUacGCCUCCGgCGCCGUCGUgcGCCg -3' miRNA: 3'- -GCGG--UGGAGGCaGCGGCAGCGacUGG- -5' |
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13981 | 5' | -60.1 | NC_003521.1 | + | 167971 | 0.78 | 0.277755 |
Target: 5'- cCGCCguGCCUaCCGUCGCCG-CGCccaGGCCg -3' miRNA: 3'- -GCGG--UGGA-GGCAGCGGCaGCGa--CUGG- -5' |
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13981 | 5' | -60.1 | NC_003521.1 | + | 167652 | 0.77 | 0.302947 |
Target: 5'- gGCCAgCUCCG-CGCCagGUCGCaGGCCg -3' miRNA: 3'- gCGGUgGAGGCaGCGG--CAGCGaCUGG- -5' |
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13981 | 5' | -60.1 | NC_003521.1 | + | 24706 | 0.75 | 0.40461 |
Target: 5'- cCGCgGCCUCCG-CGCCG-CGCUcaACCa -3' miRNA: 3'- -GCGgUGGAGGCaGCGGCaGCGAc-UGG- -5' |
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13981 | 5' | -60.1 | NC_003521.1 | + | 109580 | 0.74 | 0.445782 |
Target: 5'- gCGCCGCUcCCGucggcaUCGCCGUCGC-GACg -3' miRNA: 3'- -GCGGUGGaGGC------AGCGGCAGCGaCUGg -5' |
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13981 | 5' | -60.1 | NC_003521.1 | + | 235296 | 0.75 | 0.412653 |
Target: 5'- gCGCCGgCUgCCGUCaCCGUCGCUGcuGCUa -3' miRNA: 3'- -GCGGUgGA-GGCAGcGGCAGCGAC--UGG- -5' |
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13981 | 5' | -60.1 | NC_003521.1 | + | 188331 | 0.75 | 0.40461 |
Target: 5'- cCGcCCACCUugucgUCGUCGCCGUUGCUucGACg -3' miRNA: 3'- -GC-GGUGGA-----GGCAGCGGCAGCGA--CUGg -5' |
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13981 | 5' | -60.1 | NC_003521.1 | + | 22383 | 0.85 | 0.103895 |
Target: 5'- gGCCAuguCCUCCGUggugccgcCGCUGUCGCUGGCCa -3' miRNA: 3'- gCGGU---GGAGGCA--------GCGGCAGCGACUGG- -5' |
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13981 | 5' | -60.1 | NC_003521.1 | + | 129638 | 0.74 | 0.437359 |
Target: 5'- aGcCCACCgUCCGcggCGCCGUCGCcggggcGGCCg -3' miRNA: 3'- gC-GGUGG-AGGCa--GCGGCAGCGa-----CUGG- -5' |
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13981 | 5' | -60.1 | NC_003521.1 | + | 94171 | 0.82 | 0.152947 |
Target: 5'- uGCCGuCCUCC-UCGCCGUCGUcgUGGCCg -3' miRNA: 3'- gCGGU-GGAGGcAGCGGCAGCG--ACUGG- -5' |
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13981 | 5' | -60.1 | NC_003521.1 | + | 22186 | 0.76 | 0.365921 |
Target: 5'- gCGCCGCCggCCGUggccgcuuacCGCCGcgCGCUGGCg -3' miRNA: 3'- -GCGGUGGa-GGCA----------GCGGCa-GCGACUGg -5' |
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13981 | 5' | -60.1 | NC_003521.1 | + | 26808 | 0.74 | 0.437359 |
Target: 5'- aCGCCACC-CUGagCGCCGUCGUgucACCg -3' miRNA: 3'- -GCGGUGGaGGCa-GCGGCAGCGac-UGG- -5' |
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13981 | 5' | -60.1 | NC_003521.1 | + | 31265 | 0.74 | 0.462894 |
Target: 5'- cCGCCGCCaCCGUCGCCGccacccCGCcgGGCg -3' miRNA: 3'- -GCGGUGGaGGCAGCGGCa-----GCGa-CUGg -5' |
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13981 | 5' | -60.1 | NC_003521.1 | + | 209739 | 0.81 | 0.184691 |
Target: 5'- gGCCGCCgCCGUCGUCGcUGUUGGCCg -3' miRNA: 3'- gCGGUGGaGGCAGCGGCaGCGACUGG- -5' |
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13981 | 5' | -60.1 | NC_003521.1 | + | 44101 | 0.78 | 0.277755 |
Target: 5'- cCGCCACCaCCGUCGCCGcCGgUGAa- -3' miRNA: 3'- -GCGGUGGaGGCAGCGGCaGCgACUgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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