miRNA display CGI


Results 1 - 20 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13981 5' -60.1 NC_003521.1 + 1072 0.67 0.810305
Target:  5'- gCGCCAgCUC--UCGCCG-CGC-GACCc -3'
miRNA:   3'- -GCGGUgGAGgcAGCGGCaGCGaCUGG- -5'
13981 5' -60.1 NC_003521.1 + 1375 0.7 0.673285
Target:  5'- gGCCACCgCUGUCcccgagcccgcgcuGCUGcggaCGCUGACCa -3'
miRNA:   3'- gCGGUGGaGGCAG--------------CGGCa---GCGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 1568 0.7 0.666655
Target:  5'- gCGCCACa-CC--CGCCGUCGCUGcugacgGCCg -3'
miRNA:   3'- -GCGGUGgaGGcaGCGGCAGCGAC------UGG- -5'
13981 5' -60.1 NC_003521.1 + 2711 0.7 0.636231
Target:  5'- aCGCCACUcgugcgggagcgCCGUCaCCGccUCGCUGGCUg -3'
miRNA:   3'- -GCGGUGGa-----------GGCAGcGGC--AGCGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 3647 0.7 0.676122
Target:  5'- uGCCACggCCGcCGCCGUCuGCcucggcGGCCg -3'
miRNA:   3'- gCGGUGgaGGCaGCGGCAG-CGa-----CUGG- -5'
13981 5' -60.1 NC_003521.1 + 4345 0.67 0.84177
Target:  5'- gCGCCACCgCCGcCGgCGguUCGCUcaucgcGGCCc -3'
miRNA:   3'- -GCGGUGGaGGCaGCgGC--AGCGA------CUGG- -5'
13981 5' -60.1 NC_003521.1 + 5555 0.73 0.49811
Target:  5'- cCGCCGCCaucguuguuccgUCCGUCGCUGUCaucaCcGGCCg -3'
miRNA:   3'- -GCGGUGG------------AGGCAGCGGCAGc---GaCUGG- -5'
13981 5' -60.1 NC_003521.1 + 6018 0.69 0.704308
Target:  5'- uCGUCAUCgCUGUCGUCGUCGU--ACCa -3'
miRNA:   3'- -GCGGUGGaGGCAGCGGCAGCGacUGG- -5'
13981 5' -60.1 NC_003521.1 + 11551 0.78 0.259979
Target:  5'- uCGCUacGCCUCCGgCGCCGUCGUgcGCCg -3'
miRNA:   3'- -GCGG--UGGAGGCaGCGGCAGCGacUGG- -5'
13981 5' -60.1 NC_003521.1 + 12373 0.68 0.759054
Target:  5'- uCGCUAcCCUCCGgccucuuucaCGCCGaguucgugcugcUgGCUGACCg -3'
miRNA:   3'- -GCGGU-GGAGGCa---------GCGGC------------AgCGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 14769 0.68 0.785216
Target:  5'- gGCgCGCCUUCGUgGCCGaggUGCUGguGCUg -3'
miRNA:   3'- gCG-GUGGAGGCAgCGGCa--GCGAC--UGG- -5'
13981 5' -60.1 NC_003521.1 + 17098 0.67 0.802073
Target:  5'- cCGCCACCggaCC--CGCCGUCGU--ACCc -3'
miRNA:   3'- -GCGGUGGa--GGcaGCGGCAGCGacUGG- -5'
13981 5' -60.1 NC_003521.1 + 17726 0.7 0.685558
Target:  5'- cCGCCAUC-CCGcagaucuaCGCaCGuUCGCUGGCCu -3'
miRNA:   3'- -GCGGUGGaGGCa-------GCG-GC-AGCGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 17773 0.66 0.870602
Target:  5'- uGCUgugacgaugACCUggaggCCGUCGgCGU-GCUGGCCg -3'
miRNA:   3'- gCGG---------UGGA-----GGCAGCgGCAgCGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 21357 0.66 0.856537
Target:  5'- gCGCUGCUaUgGUCGCuCGUgccgcaGCUGACCg -3'
miRNA:   3'- -GCGGUGGaGgCAGCG-GCAg-----CGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 22103 0.68 0.785216
Target:  5'- aCGCCGCUUCuCGccCGCCGcCGCc-GCCg -3'
miRNA:   3'- -GCGGUGGAG-GCa-GCGGCaGCGacUGG- -5'
13981 5' -60.1 NC_003521.1 + 22186 0.76 0.365921
Target:  5'- gCGCCGCCggCCGUggccgcuuacCGCCGcgCGCUGGCg -3'
miRNA:   3'- -GCGGUGGa-GGCA----------GCGGCa-GCGACUGg -5'
13981 5' -60.1 NC_003521.1 + 22383 0.85 0.103895
Target:  5'- gGCCAuguCCUCCGUggugccgcCGCUGUCGCUGGCCa -3'
miRNA:   3'- gCGGU---GGAGGCA--------GCGGCAGCGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 22739 0.75 0.412653
Target:  5'- uCGUCACCggcgCCGcCGCC-UCGCUGugCu -3'
miRNA:   3'- -GCGGUGGa---GGCaGCGGcAGCGACugG- -5'
13981 5' -60.1 NC_003521.1 + 23087 0.66 0.883926
Target:  5'- uGUCugCgUCCGUgGCCGg-GCggggGGCCg -3'
miRNA:   3'- gCGGugG-AGGCAgCGGCagCGa---CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.