miRNA display CGI


Results 1 - 20 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13981 5' -60.1 NC_003521.1 + 240476 0.72 0.534475
Target:  5'- gCGCCGCCUCCGgcaGCUcaCGCuugguUGGCCg -3'
miRNA:   3'- -GCGGUGGAGGCag-CGGcaGCG-----ACUGG- -5'
13981 5' -60.1 NC_003521.1 + 239514 0.69 0.741115
Target:  5'- gCGCCACUcgCCGgCGCCGUaGCgGAaCCa -3'
miRNA:   3'- -GCGGUGGa-GGCaGCGGCAgCGaCU-GG- -5'
13981 5' -60.1 NC_003521.1 + 239299 0.68 0.75013
Target:  5'- cCGCCAUCcccugaggcgUUCGUgGUCGUUGCUGugUg -3'
miRNA:   3'- -GCGGUGG----------AGGCAgCGGCAGCGACugG- -5'
13981 5' -60.1 NC_003521.1 + 236890 0.69 0.704308
Target:  5'- aCGCCGuuUUacUCGCCGUCGCUuGGCa -3'
miRNA:   3'- -GCGGUggAGgcAGCGGCAGCGA-CUGg -5'
13981 5' -60.1 NC_003521.1 + 236525 0.66 0.883926
Target:  5'- cCGCCGucCCUCUGccUUGUCGUCGUUcGGCg -3'
miRNA:   3'- -GCGGU--GGAGGC--AGCGGCAGCGA-CUGg -5'
13981 5' -60.1 NC_003521.1 + 236361 0.68 0.75013
Target:  5'- uCGCCGCCcagaCCGUCaGCCGcaUCGCU--CCg -3'
miRNA:   3'- -GCGGUGGa---GGCAG-CGGC--AGCGAcuGG- -5'
13981 5' -60.1 NC_003521.1 + 235296 0.75 0.412653
Target:  5'- gCGCCGgCUgCCGUCaCCGUCGCUGcuGCUa -3'
miRNA:   3'- -GCGGUgGA-GGCAGcGGCAGCGAC--UGG- -5'
13981 5' -60.1 NC_003521.1 + 234746 0.7 0.657164
Target:  5'- aCGCCGCCgcaccggCCGUCGCauucccuUCGUcGACCc -3'
miRNA:   3'- -GCGGUGGa------GGCAGCGgc-----AGCGaCUGG- -5'
13981 5' -60.1 NC_003521.1 + 234272 0.71 0.597235
Target:  5'- gCGCCACCU-CGUCGCCcugcccuggggcggGaCGCaGACCg -3'
miRNA:   3'- -GCGGUGGAgGCAGCGG--------------CaGCGaCUGG- -5'
13981 5' -60.1 NC_003521.1 + 233085 0.74 0.462894
Target:  5'- cCGCCGCCUCCGcCGCuCG-CGCcGcCCu -3'
miRNA:   3'- -GCGGUGGAGGCaGCG-GCaGCGaCuGG- -5'
13981 5' -60.1 NC_003521.1 + 232837 0.71 0.590604
Target:  5'- cCGgUACCUCCccCGCCGcCGCgGACCc -3'
miRNA:   3'- -GCgGUGGAGGcaGCGGCaGCGaCUGG- -5'
13981 5' -60.1 NC_003521.1 + 227378 0.68 0.776605
Target:  5'- cCGCCGCUgcgcuugacgUCCGUCGUCcUCgGC-GACCg -3'
miRNA:   3'- -GCGGUGG----------AGGCAGCGGcAG-CGaCUGG- -5'
13981 5' -60.1 NC_003521.1 + 223780 0.68 0.785216
Target:  5'- gCGCUGCUggugcugCCGUUGUCGUCGCU--CCu -3'
miRNA:   3'- -GCGGUGGa------GGCAGCGGCAGCGAcuGG- -5'
13981 5' -60.1 NC_003521.1 + 223350 0.68 0.759054
Target:  5'- cCGCUACCggugCCGUCGucucuccuCCGagCGCUG-CCg -3'
miRNA:   3'- -GCGGUGGa---GGCAGC--------GGCa-GCGACuGG- -5'
13981 5' -60.1 NC_003521.1 + 223314 0.66 0.883926
Target:  5'- gCGCCGCCgggCCGggaacCGCCGU----GACCg -3'
miRNA:   3'- -GCGGUGGa--GGCa----GCGGCAgcgaCUGG- -5'
13981 5' -60.1 NC_003521.1 + 222735 0.68 0.767882
Target:  5'- cCGCuCAUCUCgCG-CGCCGUCuggGCUacGGCCa -3'
miRNA:   3'- -GCG-GUGGAG-GCaGCGGCAG---CGA--CUGG- -5'
13981 5' -60.1 NC_003521.1 + 222727 0.68 0.759054
Target:  5'- cCGCUACCuccUCCGUCcccgcgGCCGUCGUcu-CCa -3'
miRNA:   3'- -GCGGUGG---AGGCAG------CGGCAGCGacuGG- -5'
13981 5' -60.1 NC_003521.1 + 222087 0.68 0.793707
Target:  5'- gCGCCACCgCCGccacgaUCGCCGcCGCcagcGGCa -3'
miRNA:   3'- -GCGGUGGaGGC------AGCGGCaGCGa---CUGg -5'
13981 5' -60.1 NC_003521.1 + 221993 0.7 0.666655
Target:  5'- aGCCGCCUCUcgcgGUUGCgGUCGCUcAgCa -3'
miRNA:   3'- gCGGUGGAGG----CAGCGgCAGCGAcUgG- -5'
13981 5' -60.1 NC_003521.1 + 221942 0.69 0.732018
Target:  5'- gCGCCucguCCU-CGUCGCUGcUCaGCUGACa -3'
miRNA:   3'- -GCGGu---GGAgGCAGCGGC-AG-CGACUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.