miRNA display CGI


Results 21 - 40 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13981 5' -60.1 NC_003521.1 + 23338 0.67 0.826343
Target:  5'- gGCCACCUgcaCGUuccUGCUGUgucugggcauggUGCUGGCCu -3'
miRNA:   3'- gCGGUGGAg--GCA---GCGGCA------------GCGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 23493 0.7 0.685558
Target:  5'- gGCCGCCgUCCGcCaCCGU-GCUGACg -3'
miRNA:   3'- gCGGUGG-AGGCaGcGGCAgCGACUGg -5'
13981 5' -60.1 NC_003521.1 + 24206 0.68 0.767882
Target:  5'- gCGcCCGCCUaCCGUCGaCUGcUGCUGucuCCg -3'
miRNA:   3'- -GC-GGUGGA-GGCAGC-GGCaGCGACu--GG- -5'
13981 5' -60.1 NC_003521.1 + 24706 0.75 0.40461
Target:  5'- cCGCgGCCUCCG-CGCCG-CGCUcaACCa -3'
miRNA:   3'- -GCGgUGGAGGCaGCGGCaGCGAc-UGG- -5'
13981 5' -60.1 NC_003521.1 + 24827 0.66 0.86366
Target:  5'- cCGUCAgUCUCUG-CGUgG-CGCUGGCCg -3'
miRNA:   3'- -GCGGU-GGAGGCaGCGgCaGCGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 25611 0.68 0.776605
Target:  5'- uCGCUACCUucaCCGggcuggCGCUGcuggCGCgUGACCa -3'
miRNA:   3'- -GCGGUGGA---GGCa-----GCGGCa---GCG-ACUGG- -5'
13981 5' -60.1 NC_003521.1 + 26000 0.66 0.870602
Target:  5'- aGCauggaACCgCCGUCGCCG-CGCccGGCg -3'
miRNA:   3'- gCGg----UGGaGGCAGCGGCaGCGa-CUGg -5'
13981 5' -60.1 NC_003521.1 + 26808 0.74 0.437359
Target:  5'- aCGCCACC-CUGagCGCCGUCGUgucACCg -3'
miRNA:   3'- -GCGGUGGaGGCa-GCGGCAGCGac-UGG- -5'
13981 5' -60.1 NC_003521.1 + 27084 0.7 0.675177
Target:  5'- cCGCCACCacggccuUCUGcggCGCCGUCugGCUGGgCa -3'
miRNA:   3'- -GCGGUGG-------AGGCa--GCGGCAG--CGACUgG- -5'
13981 5' -60.1 NC_003521.1 + 28269 0.66 0.877359
Target:  5'- -aCCAcCCUCCcccUgGCCGUCGUgGGCCu -3'
miRNA:   3'- gcGGU-GGAGGc--AgCGGCAGCGaCUGG- -5'
13981 5' -60.1 NC_003521.1 + 29110 0.67 0.810305
Target:  5'- uCGCCGCaccaUCCGcgCGCUG-CGCUG-CUa -3'
miRNA:   3'- -GCGGUGg---AGGCa-GCGGCaGCGACuGG- -5'
13981 5' -60.1 NC_003521.1 + 30394 0.68 0.767882
Target:  5'- aGUaCGCUgCCGUCGCCGcccaCGCcGACCa -3'
miRNA:   3'- gCG-GUGGaGGCAGCGGCa---GCGaCUGG- -5'
13981 5' -60.1 NC_003521.1 + 31075 0.69 0.713607
Target:  5'- aGCCGguaCUCCGgcuGCCGUgGCUG-CCg -3'
miRNA:   3'- gCGGUg--GAGGCag-CGGCAgCGACuGG- -5'
13981 5' -60.1 NC_003521.1 + 31265 0.74 0.462894
Target:  5'- cCGCCGCCaCCGUCGCCGccacccCGCcgGGCg -3'
miRNA:   3'- -GCGGUGGaGGCAGCGGCa-----GCGa-CUGg -5'
13981 5' -60.1 NC_003521.1 + 32229 0.67 0.833364
Target:  5'- cCGCCGCaaaCUCaGUCGCCGUgagauagCGCUGGa- -3'
miRNA:   3'- -GCGGUG---GAGgCAGCGGCA-------GCGACUgg -5'
13981 5' -60.1 NC_003521.1 + 32888 0.67 0.810305
Target:  5'- gCGCCGCCggugCUGcCGCCGU-GCccGCCg -3'
miRNA:   3'- -GCGGUGGa---GGCaGCGGCAgCGacUGG- -5'
13981 5' -60.1 NC_003521.1 + 33387 0.68 0.776605
Target:  5'- aCGCCGCCagCCGcCGCUcUCcCUGGCUa -3'
miRNA:   3'- -GCGGUGGa-GGCaGCGGcAGcGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 35931 0.69 0.722847
Target:  5'- gGCCACCgUCC--CGCCG-CGC-GGCCa -3'
miRNA:   3'- gCGGUGG-AGGcaGCGGCaGCGaCUGG- -5'
13981 5' -60.1 NC_003521.1 + 36107 0.69 0.694956
Target:  5'- uCGCCAcCCUCCc-CGCCGugguggucaccUCGCUGcCCu -3'
miRNA:   3'- -GCGGU-GGAGGcaGCGGC-----------AGCGACuGG- -5'
13981 5' -60.1 NC_003521.1 + 37475 0.66 0.8485
Target:  5'- gGCCACCguggugCCGcagggcacccccaUCGCCa-CGCUGuACCa -3'
miRNA:   3'- gCGGUGGa-----GGC-------------AGCGGcaGCGAC-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.