miRNA display CGI


Results 21 - 40 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13981 5' -60.1 NC_003521.1 + 113747 0.66 0.877359
Target:  5'- gGCCGCCUCuCGUCGgUGgCcCUGcCCg -3'
miRNA:   3'- gCGGUGGAG-GCAGCgGCaGcGACuGG- -5'
13981 5' -60.1 NC_003521.1 + 164605 0.66 0.864363
Target:  5'- aCGCCACCggCCGcCGCCacucauaccaccacCGC-GACCg -3'
miRNA:   3'- -GCGGUGGa-GGCaGCGGca------------GCGaCUGG- -5'
13981 5' -60.1 NC_003521.1 + 141630 0.66 0.86366
Target:  5'- gCGCCGCggCCGUCaCCGaCG-UGACCc -3'
miRNA:   3'- -GCGGUGgaGGCAGcGGCaGCgACUGG- -5'
13981 5' -60.1 NC_003521.1 + 154423 0.66 0.856538
Target:  5'- gCGCguCCcCCG-CGUCGacCGCUGGCCc -3'
miRNA:   3'- -GCGguGGaGGCaGCGGCa-GCGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 164073 0.66 0.877359
Target:  5'- gGUCGCCUCgGagGUCGUCGUcauGCCu -3'
miRNA:   3'- gCGGUGGAGgCagCGGCAGCGac-UGG- -5'
13981 5' -60.1 NC_003521.1 + 184919 0.66 0.856538
Target:  5'- uGCCGCCgCCGUCGgaggGUCgGC-GACCg -3'
miRNA:   3'- gCGGUGGaGGCAGCgg--CAG-CGaCUGG- -5'
13981 5' -60.1 NC_003521.1 + 99710 0.66 0.877359
Target:  5'- gGCCGCUUCUGcaggucgcaggCGUCGUCGCgcACCc -3'
miRNA:   3'- gCGGUGGAGGCa----------GCGGCAGCGacUGG- -5'
13981 5' -60.1 NC_003521.1 + 183904 0.66 0.870602
Target:  5'- aGCCACggCCGUCaCgG-CGCUGuACCg -3'
miRNA:   3'- gCGGUGgaGGCAGcGgCaGCGAC-UGG- -5'
13981 5' -60.1 NC_003521.1 + 163125 0.66 0.883926
Target:  5'- cCGCCGCCUCCucgggcaucuGUCuGCCcucGUCcCUGAgCg -3'
miRNA:   3'- -GCGGUGGAGG----------CAG-CGG---CAGcGACUgG- -5'
13981 5' -60.1 NC_003521.1 + 55479 0.66 0.861542
Target:  5'- gCGCCGCCUugCCGUCcuccuggugcuccaGCCaGgcguaGUUGACCa -3'
miRNA:   3'- -GCGGUGGA--GGCAG--------------CGG-Cag---CGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 53503 0.66 0.86366
Target:  5'- gGCCGCUgCUG-CGgCGUCGCagcGGCCg -3'
miRNA:   3'- gCGGUGGaGGCaGCgGCAGCGa--CUGG- -5'
13981 5' -60.1 NC_003521.1 + 45294 0.66 0.86366
Target:  5'- gCGCCGCUgggCCaggaGCCGgagcccgaGCUGGCCg -3'
miRNA:   3'- -GCGGUGGa--GGcag-CGGCag------CGACUGG- -5'
13981 5' -60.1 NC_003521.1 + 46244 0.66 0.856538
Target:  5'- uCGCacgGCCUCgaCGUCGCCcUCGgUGGCg -3'
miRNA:   3'- -GCGg--UGGAG--GCAGCGGcAGCgACUGg -5'
13981 5' -60.1 NC_003521.1 + 37475 0.66 0.8485
Target:  5'- gGCCACCguggugCCGcagggcacccccaUCGCCa-CGCUGuACCa -3'
miRNA:   3'- gCGGUGGa-----GGC-------------AGCGGcaGCGAC-UGG- -5'
13981 5' -60.1 NC_003521.1 + 178888 0.66 0.870602
Target:  5'- cCGCCugUUgCGUcuugagauaCGCCGUgaaCGCcGACCa -3'
miRNA:   3'- -GCGGugGAgGCA---------GCGGCA---GCGaCUGG- -5'
13981 5' -60.1 NC_003521.1 + 195846 0.66 0.877359
Target:  5'- -cCCGCCUCUGgcgucagCGCUGUCGCcucgcucucggGACUg -3'
miRNA:   3'- gcGGUGGAGGCa------GCGGCAGCGa----------CUGG- -5'
13981 5' -60.1 NC_003521.1 + 196811 0.66 0.849239
Target:  5'- aGUCAUCgaCGUCGCCGgagaCGCUGAa- -3'
miRNA:   3'- gCGGUGGagGCAGCGGCa---GCGACUgg -5'
13981 5' -60.1 NC_003521.1 + 57401 0.66 0.86366
Target:  5'- gCGCCACagcgCCGU-GCgGUCGCccACCg -3'
miRNA:   3'- -GCGGUGga--GGCAgCGgCAGCGacUGG- -5'
13981 5' -60.1 NC_003521.1 + 160286 0.66 0.856538
Target:  5'- aGCCGUCgucgUCGuacUCGUCGUCGCUG-CCg -3'
miRNA:   3'- gCGGUGGa---GGC---AGCGGCAGCGACuGG- -5'
13981 5' -60.1 NC_003521.1 + 49833 0.66 0.870602
Target:  5'- aCGuCCACCUgCGcCuGCUGcCGCUcGGCCu -3'
miRNA:   3'- -GC-GGUGGAgGCaG-CGGCaGCGA-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.