miRNA display CGI


Results 41 - 60 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13984 5' -53.7 NC_003521.1 + 139790 0.66 0.988438
Target:  5'- uUUGgCGUcGCCcUCGGcgguggcgaaGCCGCCGUCg -3'
miRNA:   3'- cGAUgGCAaUGGcAGCU----------UGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 171166 0.66 0.988438
Target:  5'- cGCUGCauaGUUAcCCGUCcgucGCUGCCGg- -3'
miRNA:   3'- -CGAUGg--CAAU-GGCAGcu--UGGCGGCag -5'
13984 5' -53.7 NC_003521.1 + 101904 0.66 0.988438
Target:  5'- aGCcGCCGUgguCCGacacCGAGCCGgCGUa -3'
miRNA:   3'- -CGaUGGCAau-GGCa---GCUUGGCgGCAg -5'
13984 5' -53.7 NC_003521.1 + 110820 0.66 0.988438
Target:  5'- aGCgGCCGUUGCgCGcC--GCCGCCGg- -3'
miRNA:   3'- -CGaUGGCAAUG-GCaGcuUGGCGGCag -5'
13984 5' -53.7 NC_003521.1 + 146245 0.66 0.988438
Target:  5'- uCUGCCGUUcccuCCGgcuuuucCCGCCGUCc -3'
miRNA:   3'- cGAUGGCAAu---GGCagcuu--GGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 11552 0.66 0.988438
Target:  5'- cGCUAcgccuCCGgcGCCGUCGug-CGCCGg- -3'
miRNA:   3'- -CGAU-----GGCaaUGGCAGCuugGCGGCag -5'
13984 5' -53.7 NC_003521.1 + 97467 0.66 0.987869
Target:  5'- cGUUGCCGccgcuucucacCCG-CGAGCCGCCaUCg -3'
miRNA:   3'- -CGAUGGCaau--------GGCaGCUUGGCGGcAG- -5'
13984 5' -53.7 NC_003521.1 + 137158 0.67 0.986976
Target:  5'- cGCcaugGCCGcgGCCGcagCGGccGCCGCCGa- -3'
miRNA:   3'- -CGa---UGGCaaUGGCa--GCU--UGGCGGCag -5'
13984 5' -53.7 NC_003521.1 + 46449 0.67 0.986976
Target:  5'- gGCUGCgGggGCUgGUCGGcCuCGUCGUCg -3'
miRNA:   3'- -CGAUGgCaaUGG-CAGCUuG-GCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 138385 0.67 0.986976
Target:  5'- uCUGCCGcgGCCugcggcgcGUCuGGAUCGCCGUg -3'
miRNA:   3'- cGAUGGCaaUGG--------CAG-CUUGGCGGCAg -5'
13984 5' -53.7 NC_003521.1 + 138034 0.67 0.986976
Target:  5'- cGCUGCCGgcgcacgggGCUGUgGGucgcccgcgACCGCCG-Cg -3'
miRNA:   3'- -CGAUGGCaa-------UGGCAgCU---------UGGCGGCaG- -5'
13984 5' -53.7 NC_003521.1 + 129970 0.67 0.986976
Target:  5'- cGCUGCucuaCGUgcACCGUCGcuGCCGCUG-Cg -3'
miRNA:   3'- -CGAUG----GCAa-UGGCAGCu-UGGCGGCaG- -5'
13984 5' -53.7 NC_003521.1 + 44108 0.67 0.986976
Target:  5'- --cACCGUcGCCGcCGGugaaguCgGCCGUCg -3'
miRNA:   3'- cgaUGGCAaUGGCaGCUu-----GgCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 234734 0.67 0.986976
Target:  5'- --aGCCGUggcggaacGCCGcCGcACCGgCCGUCg -3'
miRNA:   3'- cgaUGGCAa-------UGGCaGCuUGGC-GGCAG- -5'
13984 5' -53.7 NC_003521.1 + 234332 0.67 0.985375
Target:  5'- uCUGCCGUcACCGccuccgcugcCGGACCugccucccguGCCGUCa -3'
miRNA:   3'- cGAUGGCAaUGGCa---------GCUUGG----------CGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 90998 0.67 0.985375
Target:  5'- uGCUGCUGUUGCagcugcagcagGUCGGucacgGCCGgCCGUUc -3'
miRNA:   3'- -CGAUGGCAAUGg----------CAGCU-----UGGC-GGCAG- -5'
13984 5' -53.7 NC_003521.1 + 44153 0.67 0.985375
Target:  5'- --cGCCGU---CGUCGAGCagcagcuggCGCCGUCg -3'
miRNA:   3'- cgaUGGCAaugGCAGCUUG---------GCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 48226 0.67 0.985375
Target:  5'- --gACCGUU-CCGUCGA--CGCCGa- -3'
miRNA:   3'- cgaUGGCAAuGGCAGCUugGCGGCag -5'
13984 5' -53.7 NC_003521.1 + 208949 0.67 0.985375
Target:  5'- cCUGgCGgugcggUACCGcUCGcaccgcGCCGCCGUCu -3'
miRNA:   3'- cGAUgGCa-----AUGGC-AGCu-----UGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 77631 0.67 0.985375
Target:  5'- cGCUGCCGccgccaccACCGUgucCGcuGCCGCUGUUa -3'
miRNA:   3'- -CGAUGGCaa------UGGCA---GCu-UGGCGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.