miRNA display CGI


Results 21 - 40 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13984 5' -53.7 NC_003521.1 + 125816 0.66 0.991967
Target:  5'- uGCgugGCCGUaaacgucUGCgCGUCGGGCuCGCgGUg -3'
miRNA:   3'- -CGa--UGGCA-------AUG-GCAGCUUG-GCGgCAg -5'
13984 5' -53.7 NC_003521.1 + 80381 0.66 0.990978
Target:  5'- uCUGCCG-UGCCGUCGcGCCuuCGg- -3'
miRNA:   3'- cGAUGGCaAUGGCAGCuUGGcgGCag -5'
13984 5' -53.7 NC_003521.1 + 135444 0.66 0.990978
Target:  5'- cGCccGCgGgaACCGUCGGuCCGCCccccGUCg -3'
miRNA:   3'- -CGa-UGgCaaUGGCAGCUuGGCGG----CAG- -5'
13984 5' -53.7 NC_003521.1 + 163408 0.66 0.990978
Target:  5'- --gGCCGUggccCCGUCGucgGCUGCCGc- -3'
miRNA:   3'- cgaUGGCAau--GGCAGCu--UGGCGGCag -5'
13984 5' -53.7 NC_003521.1 + 155723 0.66 0.990978
Target:  5'- cGCUGCCGccGCCGaUGGGggaguuUCGCCGUa -3'
miRNA:   3'- -CGAUGGCaaUGGCaGCUU------GGCGGCAg -5'
13984 5' -53.7 NC_003521.1 + 5553 0.66 0.990978
Target:  5'- gGCcGCCGccAUCGUUGuuCCGuCCGUCg -3'
miRNA:   3'- -CGaUGGCaaUGGCAGCuuGGC-GGCAG- -5'
13984 5' -53.7 NC_003521.1 + 160286 0.66 0.990978
Target:  5'- --aGCCGUcgUCGUCGuACuCGUCGUCg -3'
miRNA:   3'- cgaUGGCAauGGCAGCuUG-GCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 53997 0.66 0.990978
Target:  5'- cGUUGCCcaucuuGUUGCgCGagcUgGAACCGCCGUg -3'
miRNA:   3'- -CGAUGG------CAAUG-GC---AgCUUGGCGGCAg -5'
13984 5' -53.7 NC_003521.1 + 116178 0.66 0.990863
Target:  5'- uGCUGCUGcuccugugGCCG-CGGAgaggagggagacgUCGCCGUCg -3'
miRNA:   3'- -CGAUGGCaa------UGGCaGCUU-------------GGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 124559 0.66 0.990863
Target:  5'- aGCcAUCGUUGCCGUCGuuuccuccucuagGACaGCCGa- -3'
miRNA:   3'- -CGaUGGCAAUGGCAGC-------------UUGgCGGCag -5'
13984 5' -53.7 NC_003521.1 + 201781 0.66 0.98977
Target:  5'- --aGCCGUUcGCC-UCGGcgccacacCCGCCGUCg -3'
miRNA:   3'- cgaUGGCAA-UGGcAGCUu-------GGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 123112 0.66 0.98977
Target:  5'- --gACCGUccUCGcCGGGCCGCUGUa -3'
miRNA:   3'- cgaUGGCAauGGCaGCUUGGCGGCAg -5'
13984 5' -53.7 NC_003521.1 + 70109 0.66 0.98977
Target:  5'- --gGCCGgcgUGCCGcCGAaggGCCGCUaUCa -3'
miRNA:   3'- cgaUGGCa--AUGGCaGCU---UGGCGGcAG- -5'
13984 5' -53.7 NC_003521.1 + 77969 0.66 0.98977
Target:  5'- uGgaGCCG--GCCG-CGGGCuCGCCGUUc -3'
miRNA:   3'- -CgaUGGCaaUGGCaGCUUG-GCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 147642 0.66 0.98977
Target:  5'- gGC-ACCuccgACCGUCGAGCC-CCGg- -3'
miRNA:   3'- -CGaUGGcaa-UGGCAGCUUGGcGGCag -5'
13984 5' -53.7 NC_003521.1 + 1554 0.66 0.98977
Target:  5'- --aGCCGUUcGCC-UCGGcgccacacCCGCCGUCg -3'
miRNA:   3'- cgaUGGCAA-UGGcAGCUu-------GGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 5836 0.66 0.98977
Target:  5'- --gACCGcUACCGcUgGGACCGCaCGUa -3'
miRNA:   3'- cgaUGGCaAUGGC-AgCUUGGCG-GCAg -5'
13984 5' -53.7 NC_003521.1 + 202274 0.66 0.989384
Target:  5'- uGCUACCugUGCCGuguccccaccucugUCGAGcuCCGCCGg- -3'
miRNA:   3'- -CGAUGGcaAUGGC--------------AGCUU--GGCGGCag -5'
13984 5' -53.7 NC_003521.1 + 2046 0.66 0.989384
Target:  5'- uGCUACCugUGCCGuguccccaccucugUCGAGcuCCGCCGg- -3'
miRNA:   3'- -CGAUGGcaAUGGC--------------AGCUU--GGCGGCag -5'
13984 5' -53.7 NC_003521.1 + 164116 0.66 0.988986
Target:  5'- aCUGCCGccGCCGgugccaccgcuacaCGGACCcGUCGUCg -3'
miRNA:   3'- cGAUGGCaaUGGCa-------------GCUUGG-CGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.