miRNA display CGI


Results 21 - 40 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13984 5' -53.7 NC_003521.1 + 124559 0.66 0.990863
Target:  5'- aGCcAUCGUUGCCGUCGuuuccuccucuagGACaGCCGa- -3'
miRNA:   3'- -CGaUGGCAAUGGCAGC-------------UUGgCGGCag -5'
13984 5' -53.7 NC_003521.1 + 77969 0.66 0.98977
Target:  5'- uGgaGCCG--GCCG-CGGGCuCGCCGUUc -3'
miRNA:   3'- -CgaUGGCaaUGGCaGCUUG-GCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 6400 0.66 0.993057
Target:  5'- aGCUACCGcgGCgG-CGAcgggucuuGCCGCC-UCg -3'
miRNA:   3'- -CGAUGGCaaUGgCaGCU--------UGGCGGcAG- -5'
13984 5' -53.7 NC_003521.1 + 129716 0.66 0.993057
Target:  5'- uCUGCCGgccgcggcCCGUCGAcGCgagcgcguccgCGCCGUCu -3'
miRNA:   3'- cGAUGGCaau-----GGCAGCU-UG-----------GCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 5553 0.66 0.990978
Target:  5'- gGCcGCCGccAUCGUUGuuCCGuCCGUCg -3'
miRNA:   3'- -CGaUGGCaaUGGCAGCuuGGC-GGCAG- -5'
13984 5' -53.7 NC_003521.1 + 160286 0.66 0.990978
Target:  5'- --aGCCGUcgUCGUCGuACuCGUCGUCg -3'
miRNA:   3'- cgaUGGCAauGGCAGCuUG-GCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 76914 0.66 0.992478
Target:  5'- cGCUGCCGccGcacccgaguaacgcaCCGUCGGcaccuGCCuCCGUCg -3'
miRNA:   3'- -CGAUGGCaaU---------------GGCAGCU-----UGGcGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 17099 0.66 0.991967
Target:  5'- cGCcACCGgacccGCCGUCGuACCcggcgagGUCGUCg -3'
miRNA:   3'- -CGaUGGCaa---UGGCAGCuUGG-------CGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 149399 0.66 0.992072
Target:  5'- gGCUucgugGCCGUgGCCGUCacggacGAGCaguGCUGUCu -3'
miRNA:   3'- -CGA-----UGGCAaUGGCAG------CUUGg--CGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 135444 0.66 0.990978
Target:  5'- cGCccGCgGgaACCGUCGGuCCGCCccccGUCg -3'
miRNA:   3'- -CGa-UGgCaaUGGCAGCUuGGCGG----CAG- -5'
13984 5' -53.7 NC_003521.1 + 170284 0.66 0.993057
Target:  5'- gGCUGCUGUgucgGCCGgcCGAGCgcgagGCgGUCa -3'
miRNA:   3'- -CGAUGGCAa---UGGCa-GCUUGg----CGgCAG- -5'
13984 5' -53.7 NC_003521.1 + 201377 0.66 0.993057
Target:  5'- cGCUGCCGUccCCGg-GAGCCacggcGCCGcCu -3'
miRNA:   3'- -CGAUGGCAauGGCagCUUGG-----CGGCaG- -5'
13984 5' -53.7 NC_003521.1 + 147642 0.66 0.98977
Target:  5'- gGC-ACCuccgACCGUCGAGCC-CCGg- -3'
miRNA:   3'- -CGaUGGcaa-UGGCAGCUUGGcGGCag -5'
13984 5' -53.7 NC_003521.1 + 5836 0.66 0.98977
Target:  5'- --gACCGcUACCGcUgGGACCGCaCGUa -3'
miRNA:   3'- cgaUGGCaAUGGC-AgCUUGGCG-GCAg -5'
13984 5' -53.7 NC_003521.1 + 155723 0.66 0.990978
Target:  5'- cGCUGCCGccGCCGaUGGGggaguuUCGCCGUa -3'
miRNA:   3'- -CGAUGGCaaUGGCaGCUU------GGCGGCAg -5'
13984 5' -53.7 NC_003521.1 + 125816 0.66 0.991967
Target:  5'- uGCgugGCCGUaaacgucUGCgCGUCGGGCuCGCgGUg -3'
miRNA:   3'- -CGa--UGGCA-------AUG-GCAGCUUG-GCGgCAg -5'
13984 5' -53.7 NC_003521.1 + 1554 0.66 0.98977
Target:  5'- --aGCCGUUcGCC-UCGGcgccacacCCGCCGUCg -3'
miRNA:   3'- cgaUGGCAA-UGGcAGCUu-------GGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 130105 0.66 0.992072
Target:  5'- aGCUGCCGggccucuucUGCCccugcgucGUCGGcggcGCCGCCGc- -3'
miRNA:   3'- -CGAUGGCa--------AUGG--------CAGCU----UGGCGGCag -5'
13984 5' -53.7 NC_003521.1 + 163408 0.66 0.990978
Target:  5'- --gGCCGUggccCCGUCGucgGCUGCCGc- -3'
miRNA:   3'- cgaUGGCAau--GGCAGCu--UGGCGGCag -5'
13984 5' -53.7 NC_003521.1 + 146245 0.66 0.988438
Target:  5'- uCUGCCGUUcccuCCGgcuuuucCCGCCGUCc -3'
miRNA:   3'- cGAUGGCAAu---GGCagcuu--GGCGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.