miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13984 5' -53.7 NC_003521.1 + 123112 0.66 0.98977
Target:  5'- --gACCGUccUCGcCGGGCCGCUGUa -3'
miRNA:   3'- cgaUGGCAauGGCaGCUUGGCGGCAg -5'
13984 5' -53.7 NC_003521.1 + 97467 0.66 0.987869
Target:  5'- cGUUGCCGccgcuucucacCCG-CGAGCCGCCaUCg -3'
miRNA:   3'- -CGAUGGCaau--------GGCaGCUUGGCGGcAG- -5'
13984 5' -53.7 NC_003521.1 + 129716 0.66 0.993057
Target:  5'- uCUGCCGgccgcggcCCGUCGAcGCgagcgcguccgCGCCGUCu -3'
miRNA:   3'- cGAUGGCaau-----GGCAGCU-UG-----------GCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 70109 0.66 0.98977
Target:  5'- --gGCCGgcgUGCCGcCGAaggGCCGCUaUCa -3'
miRNA:   3'- cgaUGGCa--AUGGCaGCU---UGGCGGcAG- -5'
13984 5' -53.7 NC_003521.1 + 130105 0.66 0.992072
Target:  5'- aGCUGCCGggccucuucUGCCccugcgucGUCGGcggcGCCGCCGc- -3'
miRNA:   3'- -CGAUGGCa--------AUGG--------CAGCU----UGGCGGCag -5'
13984 5' -53.7 NC_003521.1 + 17099 0.66 0.991967
Target:  5'- cGCcACCGgacccGCCGUCGuACCcggcgagGUCGUCg -3'
miRNA:   3'- -CGaUGGCaa---UGGCAGCuUGG-------CGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 53997 0.66 0.990978
Target:  5'- cGUUGCCcaucuuGUUGCgCGagcUgGAACCGCCGUg -3'
miRNA:   3'- -CGAUGG------CAAUG-GC---AgCUUGGCGGCAg -5'
13984 5' -53.7 NC_003521.1 + 6400 0.66 0.993057
Target:  5'- aGCUACCGcgGCgG-CGAcgggucuuGCCGCC-UCg -3'
miRNA:   3'- -CGAUGGCaaUGgCaGCU--------UGGCGGcAG- -5'
13984 5' -53.7 NC_003521.1 + 160286 0.66 0.990978
Target:  5'- --aGCCGUcgUCGUCGuACuCGUCGUCg -3'
miRNA:   3'- cgaUGGCAauGGCAGCuUG-GCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 5553 0.66 0.990978
Target:  5'- gGCcGCCGccAUCGUUGuuCCGuCCGUCg -3'
miRNA:   3'- -CGaUGGCaaUGGCAGCuuGGC-GGCAG- -5'
13984 5' -53.7 NC_003521.1 + 139790 0.66 0.988438
Target:  5'- uUUGgCGUcGCCcUCGGcgguggcgaaGCCGCCGUCg -3'
miRNA:   3'- cGAUgGCAaUGGcAGCU----------UGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 202274 0.66 0.989384
Target:  5'- uGCUACCugUGCCGuguccccaccucugUCGAGcuCCGCCGg- -3'
miRNA:   3'- -CGAUGGcaAUGGC--------------AGCUU--GGCGGCag -5'
13984 5' -53.7 NC_003521.1 + 149399 0.66 0.992072
Target:  5'- gGCUucgugGCCGUgGCCGUCacggacGAGCaguGCUGUCu -3'
miRNA:   3'- -CGA-----UGGCAaUGGCAG------CUUGg--CGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 116178 0.66 0.990863
Target:  5'- uGCUGCUGcuccugugGCCG-CGGAgaggagggagacgUCGCCGUCg -3'
miRNA:   3'- -CGAUGGCaa------UGGCaGCUU-------------GGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 125816 0.66 0.991967
Target:  5'- uGCgugGCCGUaaacgucUGCgCGUCGGGCuCGCgGUg -3'
miRNA:   3'- -CGa--UGGCA-------AUG-GCAGCUUG-GCGgCAg -5'
13984 5' -53.7 NC_003521.1 + 171166 0.66 0.988438
Target:  5'- cGCUGCauaGUUAcCCGUCcgucGCUGCCGg- -3'
miRNA:   3'- -CGAUGg--CAAU-GGCAGcu--UGGCGGCag -5'
13984 5' -53.7 NC_003521.1 + 135444 0.66 0.990978
Target:  5'- cGCccGCgGgaACCGUCGGuCCGCCccccGUCg -3'
miRNA:   3'- -CGa-UGgCaaUGGCAGCUuGGCGG----CAG- -5'
13984 5' -53.7 NC_003521.1 + 201781 0.66 0.98977
Target:  5'- --aGCCGUUcGCC-UCGGcgccacacCCGCCGUCg -3'
miRNA:   3'- cgaUGGCAA-UGGcAGCUu-------GGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 188614 0.66 0.993057
Target:  5'- cCUACCGgccccgUACUGUCugauGAGCuCGCCGcCc -3'
miRNA:   3'- cGAUGGCa-----AUGGCAG----CUUG-GCGGCaG- -5'
13984 5' -53.7 NC_003521.1 + 155723 0.66 0.990978
Target:  5'- cGCUGCCGccGCCGaUGGGggaguuUCGCCGUa -3'
miRNA:   3'- -CGAUGGCaaUGGCaGCUU------GGCGGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.