miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13984 5' -53.7 NC_003521.1 + 1149 0.66 0.993057
Target:  5'- cGCUGCCGUccCCGg-GAGCCacggcGCCGcCu -3'
miRNA:   3'- -CGAUGGCAauGGCagCUUGG-----CGGCaG- -5'
13984 5' -53.7 NC_003521.1 + 1554 0.66 0.98977
Target:  5'- --aGCCGUUcGCC-UCGGcgccacacCCGCCGUCg -3'
miRNA:   3'- cgaUGGCAA-UGGcAGCUu-------GGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 2046 0.66 0.989384
Target:  5'- uGCUACCugUGCCGuguccccaccucugUCGAGcuCCGCCGg- -3'
miRNA:   3'- -CGAUGGcaAUGGC--------------AGCUU--GGCGGCag -5'
13984 5' -53.7 NC_003521.1 + 5553 0.66 0.990978
Target:  5'- gGCcGCCGccAUCGUUGuuCCGuCCGUCg -3'
miRNA:   3'- -CGaUGGCaaUGGCAGCuuGGC-GGCAG- -5'
13984 5' -53.7 NC_003521.1 + 5836 0.66 0.98977
Target:  5'- --gACCGcUACCGcUgGGACCGCaCGUa -3'
miRNA:   3'- cgaUGGCaAUGGC-AgCUUGGCG-GCAg -5'
13984 5' -53.7 NC_003521.1 + 5992 0.67 0.979668
Target:  5'- cGCUaucGCCGUccCCGUCGucgucuucgucAUCGCUGUCg -3'
miRNA:   3'- -CGA---UGGCAauGGCAGCu----------UGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 6168 0.67 0.977439
Target:  5'- gGCU-CCGgcuccugGCUGUUGGGuCCGUCGUCc -3'
miRNA:   3'- -CGAuGGCaa-----UGGCAGCUU-GGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 6400 0.66 0.993057
Target:  5'- aGCUACCGcgGCgG-CGAcgggucuuGCCGCC-UCg -3'
miRNA:   3'- -CGAUGGCaaUGgCaGCU--------UGGCGGcAG- -5'
13984 5' -53.7 NC_003521.1 + 11518 0.66 0.992072
Target:  5'- cGCU-CCGcgcACCGUCGacAugCGCCaGUCc -3'
miRNA:   3'- -CGAuGGCaa-UGGCAGC--UugGCGG-CAG- -5'
13984 5' -53.7 NC_003521.1 + 11552 0.66 0.988438
Target:  5'- cGCUAcgccuCCGgcGCCGUCGug-CGCCGg- -3'
miRNA:   3'- -CGAU-----GGCaaUGGCAGCuugGCGGCag -5'
13984 5' -53.7 NC_003521.1 + 13187 0.73 0.822635
Target:  5'- --gACCaGgcgUGCCGcUCGGGCCGCCGUg -3'
miRNA:   3'- cgaUGG-Ca--AUGGC-AGCUUGGCGGCAg -5'
13984 5' -53.7 NC_003521.1 + 16947 0.72 0.838903
Target:  5'- --cGCCGUUACCGUCGGggAUUGCUGg- -3'
miRNA:   3'- cgaUGGCAAUGGCAGCU--UGGCGGCag -5'
13984 5' -53.7 NC_003521.1 + 17099 0.66 0.991967
Target:  5'- cGCcACCGgacccGCCGUCGuACCcggcgagGUCGUCg -3'
miRNA:   3'- -CGaUGGCaa---UGGCAGCuUGG-------CGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 17434 0.69 0.960172
Target:  5'- cGCUGCCGUUACU-UCGGcagaaACCGCgG-Ca -3'
miRNA:   3'- -CGAUGGCAAUGGcAGCU-----UGGCGgCaG- -5'
13984 5' -53.7 NC_003521.1 + 18133 0.68 0.963543
Target:  5'- cGCccgGCCGc-ACCGaggUCGAGCCGCUGcUCa -3'
miRNA:   3'- -CGa--UGGCaaUGGC---AGCUUGGCGGC-AG- -5'
13984 5' -53.7 NC_003521.1 + 22118 0.66 0.993057
Target:  5'- cGCcGCCGccGCCGUCuccuCCGCCuUCg -3'
miRNA:   3'- -CGaUGGCaaUGGCAGcuu-GGCGGcAG- -5'
13984 5' -53.7 NC_003521.1 + 22190 0.67 0.983629
Target:  5'- cGCcgGCCGUgGCCG-CuuACCGCCG-Cg -3'
miRNA:   3'- -CGa-UGGCAaUGGCaGcuUGGCGGCaG- -5'
13984 5' -53.7 NC_003521.1 + 24205 0.76 0.674261
Target:  5'- cGCgcCCGccUACCGUCGAcuGCUGCUGUCu -3'
miRNA:   3'- -CGauGGCa-AUGGCAGCU--UGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 26640 0.69 0.944561
Target:  5'- uGCgGCaCGUUGCCacCGAACUGcCCGUCg -3'
miRNA:   3'- -CGaUG-GCAAUGGcaGCUUGGC-GGCAG- -5'
13984 5' -53.7 NC_003521.1 + 30223 0.7 0.940109
Target:  5'- gGCcgGCCGUUGgCGUCGcGCUGCagGUCc -3'
miRNA:   3'- -CGa-UGGCAAUgGCAGCuUGGCGg-CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.