miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13984 5' -53.7 NC_003521.1 + 236552 0.66 0.993057
Target:  5'- --cGgCGUcGCuCGUCGGcuCCGCCGUCc -3'
miRNA:   3'- cgaUgGCAaUG-GCAGCUu-GGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 235301 0.74 0.760939
Target:  5'- gGCUGCCGUcACCGUCGcuGCUGCUa-- -3'
miRNA:   3'- -CGAUGGCAaUGGCAGCu-UGGCGGcag -5'
13984 5' -53.7 NC_003521.1 + 234734 0.67 0.986976
Target:  5'- --aGCCGUggcggaacGCCGcCGcACCGgCCGUCg -3'
miRNA:   3'- cgaUGGCAa-------UGGCaGCuUGGC-GGCAG- -5'
13984 5' -53.7 NC_003521.1 + 234596 0.73 0.805712
Target:  5'- aGC-GCCGgucuCCauUCGGACCGCCGUCa -3'
miRNA:   3'- -CGaUGGCaau-GGc-AGCUUGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 234332 0.67 0.985375
Target:  5'- uCUGCCGUcACCGccuccgcugcCGGACCugccucccguGCCGUCa -3'
miRNA:   3'- cGAUGGCAaUGGCa---------GCUUGG----------CGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 233838 0.68 0.963543
Target:  5'- uCUACCGUuccauUAUCGUCGu-CUGCCGgUCu -3'
miRNA:   3'- cGAUGGCA-----AUGGCAGCuuGGCGGC-AG- -5'
13984 5' -53.7 NC_003521.1 + 233188 0.8 0.483092
Target:  5'- gGCcGCCGUUACCGUCGGucguucccgacaguCCGCCGcCa -3'
miRNA:   3'- -CGaUGGCAAUGGCAGCUu-------------GGCGGCaG- -5'
13984 5' -53.7 NC_003521.1 + 227373 0.67 0.979668
Target:  5'- cGCUACCGccGCUGcgcUUGAcguCCGUCGUCc -3'
miRNA:   3'- -CGAUGGCaaUGGC---AGCUu--GGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 225899 0.67 0.981729
Target:  5'- cGCUGCCGcu-CgCGcUCGAAgCGCCGg- -3'
miRNA:   3'- -CGAUGGCaauG-GC-AGCUUgGCGGCag -5'
13984 5' -53.7 NC_003521.1 + 225519 0.67 0.977439
Target:  5'- cGCUcggcGCCGUcGCgCGUCGAcgaaCGCuCGUCa -3'
miRNA:   3'- -CGA----UGGCAaUG-GCAGCUug--GCG-GCAG- -5'
13984 5' -53.7 NC_003521.1 + 223790 0.75 0.723128
Target:  5'- uGCUGCCGUUGUCGUCGcuccucuucCCGCUGUUg -3'
miRNA:   3'- -CGAUGGCAAUGGCAGCuu-------GGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 223775 0.75 0.742216
Target:  5'- cGCUgucggcGCCGUUACCGccgUGGGCCGCCa-- -3'
miRNA:   3'- -CGA------UGGCAAUGGCa--GCUUGGCGGcag -5'
13984 5' -53.7 NC_003521.1 + 223351 0.75 0.717341
Target:  5'- cGCUACCGgUGCCGUCGucucuccuccgagcGCUGCCG-Cg -3'
miRNA:   3'- -CGAUGGCaAUGGCAGCu-------------UGGCGGCaG- -5'
13984 5' -53.7 NC_003521.1 + 223315 0.73 0.830855
Target:  5'- cGCcGCCGg-GCCGg-GAACCGCCGUg -3'
miRNA:   3'- -CGaUGGCaaUGGCagCUUGGCGGCAg -5'
13984 5' -53.7 NC_003521.1 + 222728 0.71 0.90264
Target:  5'- cGCUACCuccuCCGUCcccgcGGCCGUCGUCu -3'
miRNA:   3'- -CGAUGGcaauGGCAGc----UUGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 220652 0.7 0.935433
Target:  5'- cGCga-CGcggACCGUCGucGCCGUCGUCu -3'
miRNA:   3'- -CGaugGCaa-UGGCAGCu-UGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 214786 0.69 0.944561
Target:  5'- cGCUcGCC---GCCGUCcucuucACCGCCGUCg -3'
miRNA:   3'- -CGA-UGGcaaUGGCAGcu----UGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 212845 0.68 0.963543
Target:  5'- cGCUGCCGccgugGCCGU-GAgcGCCGCCu-- -3'
miRNA:   3'- -CGAUGGCaa---UGGCAgCU--UGGCGGcag -5'
13984 5' -53.7 NC_003521.1 + 212528 0.72 0.838903
Target:  5'- cGCUGCCGcUGCUcucguuGUCGGugugGCUGCUGUCa -3'
miRNA:   3'- -CGAUGGCaAUGG------CAGCU----UGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 209724 0.7 0.940109
Target:  5'- uGC-GCCGcgugUACCGgcc-GCCGCCGUCg -3'
miRNA:   3'- -CGaUGGCa---AUGGCagcuUGGCGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.