miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13984 5' -53.7 NC_003521.1 + 79600 0.72 0.861956
Target:  5'- cGCUGCCGccGCCaUCGAACuUGCCGg- -3'
miRNA:   3'- -CGAUGGCaaUGGcAGCUUG-GCGGCag -5'
13984 5' -53.7 NC_003521.1 + 127049 0.73 0.814252
Target:  5'- cGCUgGCCGUcGCCGUCGucgacGCgGCCuGUCg -3'
miRNA:   3'- -CGA-UGGCAaUGGCAGCu----UGgCGG-CAG- -5'
13984 5' -53.7 NC_003521.1 + 190029 0.73 0.830855
Target:  5'- cGCUGCCaucACCGUCGccgaucgaccagGACCGCCG-Cg -3'
miRNA:   3'- -CGAUGGcaaUGGCAGC------------UUGGCGGCaG- -5'
13984 5' -53.7 NC_003521.1 + 16947 0.72 0.838903
Target:  5'- --cGCCGUUACCGUCGGggAUUGCUGg- -3'
miRNA:   3'- cgaUGGCAAUGGCAGCU--UGGCGGCag -5'
13984 5' -53.7 NC_003521.1 + 167591 0.72 0.838903
Target:  5'- cGCUGCUGUUGCCGcUCGugguggcguuGGUCGUCGUCg -3'
miRNA:   3'- -CGAUGGCAAUGGC-AGC----------UUGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 196369 0.72 0.838903
Target:  5'- uGCgUGgCGUUguacucgcAUCGcCGAGCCGCCGUCa -3'
miRNA:   3'- -CG-AUgGCAA--------UGGCaGCUUGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 132463 0.72 0.846774
Target:  5'- gGCgcguCCGgucaGCCGUCuucggaGACCGCCGUCg -3'
miRNA:   3'- -CGau--GGCaa--UGGCAGc-----UUGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 114498 0.72 0.861956
Target:  5'- gGgUGCUGU--CCGUCGuGGCCGCCGUg -3'
miRNA:   3'- -CgAUGGCAauGGCAGC-UUGGCGGCAg -5'
13984 5' -53.7 NC_003521.1 + 187990 0.72 0.861956
Target:  5'- ---gUCGUcgaUGCUGUCGAucuccACCGCCGUCu -3'
miRNA:   3'- cgauGGCA---AUGGCAGCU-----UGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 168951 0.73 0.805712
Target:  5'- cGCcGCUGUcGCCGUCGcucccGCUGCUGUCg -3'
miRNA:   3'- -CGaUGGCAaUGGCAGCu----UGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 171101 0.73 0.797023
Target:  5'- cGCccGCCGUUACCGcguaccUCaGGGCCGCCGcCa -3'
miRNA:   3'- -CGa-UGGCAAUGGC------AG-CUUGGCGGCaG- -5'
13984 5' -53.7 NC_003521.1 + 77511 0.74 0.788193
Target:  5'- cGCUcgcGCCGcugACCGU-GGACaCGCCGUCg -3'
miRNA:   3'- -CGA---UGGCaa-UGGCAgCUUG-GCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 79549 0.8 0.479406
Target:  5'- cGCUGCUGcUACUGUU--GCCGCCGUCg -3'
miRNA:   3'- -CGAUGGCaAUGGCAGcuUGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 233188 0.8 0.483092
Target:  5'- gGCcGCCGUUACCGUCGGucguucccgacaguCCGCCGcCa -3'
miRNA:   3'- -CGaUGGCAAUGGCAGCUu-------------GGCGGCaG- -5'
13984 5' -53.7 NC_003521.1 + 92271 0.77 0.604683
Target:  5'- cGCUGCCGcUACCGgccgGAGCCgGUCGUCa -3'
miRNA:   3'- -CGAUGGCaAUGGCag--CUUGG-CGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 35487 0.77 0.624572
Target:  5'- aGCUGCCGccGCCGagGAGgCGCCGUa -3'
miRNA:   3'- -CGAUGGCaaUGGCagCUUgGCGGCAg -5'
13984 5' -53.7 NC_003521.1 + 223775 0.75 0.742216
Target:  5'- cGCUgucggcGCCGUUACCGccgUGGGCCGCCa-- -3'
miRNA:   3'- -CGA------UGGCAAUGGCa--GCUUGGCGGcag -5'
13984 5' -53.7 NC_003521.1 + 43522 0.74 0.751627
Target:  5'- cCUGCCGcccccucucCCGUCGAGCCGCCcUCc -3'
miRNA:   3'- cGAUGGCaau------GGCAGCUUGGCGGcAG- -5'
13984 5' -53.7 NC_003521.1 + 45505 0.74 0.770143
Target:  5'- uCUACaCGUcGCCGUCGAGCCGCa--- -3'
miRNA:   3'- cGAUG-GCAaUGGCAGCUUGGCGgcag -5'
13984 5' -53.7 NC_003521.1 + 92377 0.74 0.77923
Target:  5'- cGCUcgcCCGcUGCCGUCGcuCCGCCGg- -3'
miRNA:   3'- -CGAu--GGCaAUGGCAGCuuGGCGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.