Results 1 - 20 of 197 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13984 | 5' | -53.7 | NC_003521.1 | + | 202789 | 1.13 | 0.005264 |
Target: 5'- aGCUACCGUUACCGUCGAACCGCCGUCg -3' miRNA: 3'- -CGAUGGCAAUGGCAGCUUGGCGGCAG- -5' |
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13984 | 5' | -53.7 | NC_003521.1 | + | 223315 | 0.73 | 0.830855 |
Target: 5'- cGCcGCCGg-GCCGg-GAACCGCCGUg -3' miRNA: 3'- -CGaUGGCaaUGGCagCUUGGCGGCAg -5' |
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13984 | 5' | -53.7 | NC_003521.1 | + | 53438 | 0.72 | 0.85446 |
Target: 5'- uGCggagGCUGUUGCCGcugCucACCGUCGUCg -3' miRNA: 3'- -CGa---UGGCAAUGGCa--GcuUGGCGGCAG- -5' |
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13984 | 5' | -53.7 | NC_003521.1 | + | 188614 | 0.66 | 0.993057 |
Target: 5'- cCUACCGgccccgUACUGUCugauGAGCuCGCCGcCc -3' miRNA: 3'- cGAUGGCa-----AUGGCAG----CUUG-GCGGCaG- -5' |
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13984 | 5' | -53.7 | NC_003521.1 | + | 24205 | 0.76 | 0.674261 |
Target: 5'- cGCgcCCGccUACCGUCGAcuGCUGCUGUCu -3' miRNA: 3'- -CGauGGCa-AUGGCAGCU--UGGCGGCAG- -5' |
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13984 | 5' | -53.7 | NC_003521.1 | + | 77055 | 0.76 | 0.684132 |
Target: 5'- cGCUACCGUUguugccgccGCCGU-GAgcGCCGCUGUUg -3' miRNA: 3'- -CGAUGGCAA---------UGGCAgCU--UGGCGGCAG- -5' |
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13984 | 5' | -53.7 | NC_003521.1 | + | 223351 | 0.75 | 0.717341 |
Target: 5'- cGCUACCGgUGCCGUCGucucuccuccgagcGCUGCCG-Cg -3' miRNA: 3'- -CGAUGGCaAUGGCAGCu-------------UGGCGGCaG- -5' |
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13984 | 5' | -53.7 | NC_003521.1 | + | 223790 | 0.75 | 0.723128 |
Target: 5'- uGCUGCCGUUGUCGUCGcuccucuucCCGCUGUUg -3' miRNA: 3'- -CGAUGGCAAUGGCAGCuu-------GGCGGCAG- -5' |
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13984 | 5' | -53.7 | NC_003521.1 | + | 121124 | 0.74 | 0.751627 |
Target: 5'- gGCUGgUGgacGCCGUgGAGCUGCUGUCg -3' miRNA: 3'- -CGAUgGCaa-UGGCAgCUUGGCGGCAG- -5' |
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13984 | 5' | -53.7 | NC_003521.1 | + | 165187 | 0.73 | 0.830855 |
Target: 5'- cGCcGCUGUUGCCGUCGucAUCGUCGg- -3' miRNA: 3'- -CGaUGGCAAUGGCAGCu-UGGCGGCag -5' |
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13984 | 5' | -53.7 | NC_003521.1 | + | 109579 | 0.74 | 0.788193 |
Target: 5'- aGC-GCCGcucCCGUCGGcAUCGCCGUCg -3' miRNA: 3'- -CGaUGGCaauGGCAGCU-UGGCGGCAG- -5' |
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13984 | 5' | -53.7 | NC_003521.1 | + | 160518 | 0.74 | 0.751627 |
Target: 5'- aGCUccagcaccACCGUcACCagcacGUCGGACgCGCCGUCg -3' miRNA: 3'- -CGA--------UGGCAaUGG-----CAGCUUG-GCGGCAG- -5' |
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13984 | 5' | -53.7 | NC_003521.1 | + | 47934 | 0.78 | 0.536007 |
Target: 5'- cGCUGCUG--AUCGUC-AACCGCCGUCg -3' miRNA: 3'- -CGAUGGCaaUGGCAGcUUGGCGGCAG- -5' |
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13984 | 5' | -53.7 | NC_003521.1 | + | 234596 | 0.73 | 0.805712 |
Target: 5'- aGC-GCCGgucuCCauUCGGACCGCCGUCa -3' miRNA: 3'- -CGaUGGCaau-GGc-AGCUUGGCGGCAG- -5' |
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13984 | 5' | -53.7 | NC_003521.1 | + | 94285 | 0.76 | 0.644483 |
Target: 5'- cGCUGCCGccGCCGgagggacccgggUgGAGCCGCCGUUu -3' miRNA: 3'- -CGAUGGCaaUGGC------------AgCUUGGCGGCAG- -5' |
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13984 | 5' | -53.7 | NC_003521.1 | + | 94163 | 0.75 | 0.723128 |
Target: 5'- gGCU-UCGUUGCCGUCcuccucGCCGUCGUCg -3' miRNA: 3'- -CGAuGGCAAUGGCAGcu----UGGCGGCAG- -5' |
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13984 | 5' | -53.7 | NC_003521.1 | + | 13187 | 0.73 | 0.822635 |
Target: 5'- --gACCaGgcgUGCCGcUCGGGCCGCCGUg -3' miRNA: 3'- cgaUGG-Ca--AUGGC-AGCUUGGCGGCAg -5' |
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13984 | 5' | -53.7 | NC_003521.1 | + | 212528 | 0.72 | 0.838903 |
Target: 5'- cGCUGCCGcUGCUcucguuGUCGGugugGCUGCUGUCa -3' miRNA: 3'- -CGAUGGCaAUGG------CAGCU----UGGCGGCAG- -5' |
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13984 | 5' | -53.7 | NC_003521.1 | + | 166121 | 0.76 | 0.654428 |
Target: 5'- gGgaGCCGcUGCCG-CGGcGCCGCCGUCg -3' miRNA: 3'- -CgaUGGCaAUGGCaGCU-UGGCGGCAG- -5' |
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13984 | 5' | -53.7 | NC_003521.1 | + | 184323 | 0.75 | 0.713469 |
Target: 5'- cGCUACCGcgGCCGUC-AGCCGCaGUa -3' miRNA: 3'- -CGAUGGCaaUGGCAGcUUGGCGgCAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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