miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13984 5' -53.7 NC_003521.1 + 202789 1.13 0.005264
Target:  5'- aGCUACCGUUACCGUCGAACCGCCGUCg -3'
miRNA:   3'- -CGAUGGCAAUGGCAGCUUGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 193172 0.83 0.330378
Target:  5'- uGCUGCUGUugcgcagcUGCCGccaGAGCCGCCGUCa -3'
miRNA:   3'- -CGAUGGCA--------AUGGCag-CUUGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 79549 0.8 0.479406
Target:  5'- cGCUGCUGcUACUGUU--GCCGCCGUCg -3'
miRNA:   3'- -CGAUGGCaAUGGCAGcuUGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 233188 0.8 0.483092
Target:  5'- gGCcGCCGUUACCGUCGGucguucccgacaguCCGCCGcCa -3'
miRNA:   3'- -CGaUGGCAAUGGCAGCUu-------------GGCGGCaG- -5'
13984 5' -53.7 NC_003521.1 + 47934 0.78 0.536007
Target:  5'- cGCUGCUG--AUCGUC-AACCGCCGUCg -3'
miRNA:   3'- -CGAUGGCaaUGGCAGcUUGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 92271 0.77 0.604683
Target:  5'- cGCUGCCGcUACCGgccgGAGCCgGUCGUCa -3'
miRNA:   3'- -CGAUGGCaAUGGCag--CUUGG-CGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 35487 0.77 0.624572
Target:  5'- aGCUGCCGccGCCGagGAGgCGCCGUa -3'
miRNA:   3'- -CGAUGGCaaUGGCagCUUgGCGGCAg -5'
13984 5' -53.7 NC_003521.1 + 94285 0.76 0.644483
Target:  5'- cGCUGCCGccGCCGgagggacccgggUgGAGCCGCCGUUu -3'
miRNA:   3'- -CGAUGGCaaUGGC------------AgCUUGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 166121 0.76 0.654428
Target:  5'- gGgaGCCGcUGCCG-CGGcGCCGCCGUCg -3'
miRNA:   3'- -CgaUGGCaAUGGCaGCU-UGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 24205 0.76 0.674261
Target:  5'- cGCgcCCGccUACCGUCGAcuGCUGCUGUCu -3'
miRNA:   3'- -CGauGGCa-AUGGCAGCU--UGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 77055 0.76 0.684132
Target:  5'- cGCUACCGUUguugccgccGCCGU-GAgcGCCGCUGUUg -3'
miRNA:   3'- -CGAUGGCAA---------UGGCAgCU--UGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 184323 0.75 0.713469
Target:  5'- cGCUACCGcgGCCGUC-AGCCGCaGUa -3'
miRNA:   3'- -CGAUGGCaaUGGCAGcUUGGCGgCAg -5'
13984 5' -53.7 NC_003521.1 + 223351 0.75 0.717341
Target:  5'- cGCUACCGgUGCCGUCGucucuccuccgagcGCUGCCG-Cg -3'
miRNA:   3'- -CGAUGGCaAUGGCAGCu-------------UGGCGGCaG- -5'
13984 5' -53.7 NC_003521.1 + 94163 0.75 0.723128
Target:  5'- gGCU-UCGUUGCCGUCcuccucGCCGUCGUCg -3'
miRNA:   3'- -CGAuGGCAAUGGCAGcu----UGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 223790 0.75 0.723128
Target:  5'- uGCUGCCGUUGUCGUCGcuccucuucCCGCUGUUg -3'
miRNA:   3'- -CGAUGGCAAUGGCAGCuu-------GGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 223775 0.75 0.742216
Target:  5'- cGCUgucggcGCCGUUACCGccgUGGGCCGCCa-- -3'
miRNA:   3'- -CGA------UGGCAAUGGCa--GCUUGGCGGcag -5'
13984 5' -53.7 NC_003521.1 + 43522 0.74 0.751627
Target:  5'- cCUGCCGcccccucucCCGUCGAGCCGCCcUCc -3'
miRNA:   3'- cGAUGGCaau------GGCAGCUUGGCGGcAG- -5'
13984 5' -53.7 NC_003521.1 + 160518 0.74 0.751627
Target:  5'- aGCUccagcaccACCGUcACCagcacGUCGGACgCGCCGUCg -3'
miRNA:   3'- -CGA--------UGGCAaUGG-----CAGCUUG-GCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 121124 0.74 0.751627
Target:  5'- gGCUGgUGgacGCCGUgGAGCUGCUGUCg -3'
miRNA:   3'- -CGAUgGCaa-UGGCAgCUUGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 235301 0.74 0.760939
Target:  5'- gGCUGCCGUcACCGUCGcuGCUGCUa-- -3'
miRNA:   3'- -CGAUGGCAaUGGCAGCu-UGGCGGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.