miRNA display CGI


Results 21 - 40 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13984 5' -53.7 NC_003521.1 + 45505 0.74 0.770143
Target:  5'- uCUACaCGUcGCCGUCGAGCCGCa--- -3'
miRNA:   3'- cGAUG-GCAaUGGCAGCUUGGCGgcag -5'
13984 5' -53.7 NC_003521.1 + 92377 0.74 0.77923
Target:  5'- cGCUcgcCCGcUGCCGUCGcuCCGCCGg- -3'
miRNA:   3'- -CGAu--GGCaAUGGCAGCuuGGCGGCag -5'
13984 5' -53.7 NC_003521.1 + 77511 0.74 0.788193
Target:  5'- cGCUcgcGCCGcugACCGU-GGACaCGCCGUCg -3'
miRNA:   3'- -CGA---UGGCaa-UGGCAgCUUG-GCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 109579 0.74 0.788193
Target:  5'- aGC-GCCGcucCCGUCGGcAUCGCCGUCg -3'
miRNA:   3'- -CGaUGGCaauGGCAGCU-UGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 171101 0.73 0.797023
Target:  5'- cGCccGCCGUUACCGcguaccUCaGGGCCGCCGcCa -3'
miRNA:   3'- -CGa-UGGCAAUGGC------AG-CUUGGCGGCaG- -5'
13984 5' -53.7 NC_003521.1 + 168951 0.73 0.805712
Target:  5'- cGCcGCUGUcGCCGUCGcucccGCUGCUGUCg -3'
miRNA:   3'- -CGaUGGCAaUGGCAGCu----UGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 234596 0.73 0.805712
Target:  5'- aGC-GCCGgucuCCauUCGGACCGCCGUCa -3'
miRNA:   3'- -CGaUGGCaau-GGc-AGCUUGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 127049 0.73 0.814252
Target:  5'- cGCUgGCCGUcGCCGUCGucgacGCgGCCuGUCg -3'
miRNA:   3'- -CGA-UGGCAaUGGCAGCu----UGgCGG-CAG- -5'
13984 5' -53.7 NC_003521.1 + 13187 0.73 0.822635
Target:  5'- --gACCaGgcgUGCCGcUCGGGCCGCCGUg -3'
miRNA:   3'- cgaUGG-Ca--AUGGC-AGCUUGGCGGCAg -5'
13984 5' -53.7 NC_003521.1 + 223315 0.73 0.830855
Target:  5'- cGCcGCCGg-GCCGg-GAACCGCCGUg -3'
miRNA:   3'- -CGaUGGCaaUGGCagCUUGGCGGCAg -5'
13984 5' -53.7 NC_003521.1 + 190029 0.73 0.830855
Target:  5'- cGCUGCCaucACCGUCGccgaucgaccagGACCGCCG-Cg -3'
miRNA:   3'- -CGAUGGcaaUGGCAGC------------UUGGCGGCaG- -5'
13984 5' -53.7 NC_003521.1 + 165187 0.73 0.830855
Target:  5'- cGCcGCUGUUGCCGUCGucAUCGUCGg- -3'
miRNA:   3'- -CGaUGGCAAUGGCAGCu-UGGCGGCag -5'
13984 5' -53.7 NC_003521.1 + 167591 0.72 0.838903
Target:  5'- cGCUGCUGUUGCCGcUCGugguggcguuGGUCGUCGUCg -3'
miRNA:   3'- -CGAUGGCAAUGGC-AGC----------UUGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 196369 0.72 0.838903
Target:  5'- uGCgUGgCGUUguacucgcAUCGcCGAGCCGCCGUCa -3'
miRNA:   3'- -CG-AUgGCAA--------UGGCaGCUUGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 16947 0.72 0.838903
Target:  5'- --cGCCGUUACCGUCGGggAUUGCUGg- -3'
miRNA:   3'- cgaUGGCAAUGGCAGCU--UGGCGGCag -5'
13984 5' -53.7 NC_003521.1 + 212528 0.72 0.838903
Target:  5'- cGCUGCCGcUGCUcucguuGUCGGugugGCUGCUGUCa -3'
miRNA:   3'- -CGAUGGCaAUGG------CAGCU----UGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 132463 0.72 0.846774
Target:  5'- gGCgcguCCGgucaGCCGUCuucggaGACCGCCGUCg -3'
miRNA:   3'- -CGau--GGCaa--UGGCAGc-----UUGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 167972 0.72 0.85446
Target:  5'- --cGCCGUgccUACCGUCGccgcGCCcagGCCGUCg -3'
miRNA:   3'- cgaUGGCA---AUGGCAGCu---UGG---CGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 53438 0.72 0.85446
Target:  5'- uGCggagGCUGUUGCCGcugCucACCGUCGUCg -3'
miRNA:   3'- -CGa---UGGCAAUGGCa--GcuUGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 79600 0.72 0.861956
Target:  5'- cGCUGCCGccGCCaUCGAACuUGCCGg- -3'
miRNA:   3'- -CGAUGGCaaUGGcAGCUUG-GCGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.