miRNA display CGI


Results 21 - 40 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13984 5' -53.7 NC_003521.1 + 30398 0.69 0.9528
Target:  5'- cGCUGCCGUcGCCGcccacgcCGAccacGCUGCgGUCc -3'
miRNA:   3'- -CGAUGGCAaUGGCa------GCU----UGGCGgCAG- -5'
13984 5' -53.7 NC_003521.1 + 34240 0.71 0.90264
Target:  5'- cGCgauaGCCGggGCCuGUCGuGCC-CCGUCg -3'
miRNA:   3'- -CGa---UGGCaaUGG-CAGCuUGGcGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 35487 0.77 0.624572
Target:  5'- aGCUGCCGccGCCGagGAGgCGCCGUa -3'
miRNA:   3'- -CGAUGGCaaUGGCagCUUgGCGGCAg -5'
13984 5' -53.7 NC_003521.1 + 36544 0.69 0.944561
Target:  5'- gGCaUGCCGgucaUGUCGAG-CGCCGUCu -3'
miRNA:   3'- -CG-AUGGCaaugGCAGCUUgGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 37112 0.68 0.972449
Target:  5'- gGCUGCUGcUGCCGUCGcuACUGgCGg- -3'
miRNA:   3'- -CGAUGGCaAUGGCAGCu-UGGCgGCag -5'
13984 5' -53.7 NC_003521.1 + 43522 0.74 0.751627
Target:  5'- cCUGCCGcccccucucCCGUCGAGCCGCCcUCc -3'
miRNA:   3'- cGAUGGCaau------GGCAGCUUGGCGGcAG- -5'
13984 5' -53.7 NC_003521.1 + 44108 0.67 0.986976
Target:  5'- --cACCGUcGCCGcCGGugaaguCgGCCGUCg -3'
miRNA:   3'- cgaUGGCAaUGGCaGCUu-----GgCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 44153 0.67 0.985375
Target:  5'- --cGCCGU---CGUCGAGCagcagcuggCGCCGUCg -3'
miRNA:   3'- cgaUGGCAaugGCAGCUUG---------GCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 44746 0.67 0.977439
Target:  5'- uGCUGCUGgacGCCGagaCGGACCGCgGa- -3'
miRNA:   3'- -CGAUGGCaa-UGGCa--GCUUGGCGgCag -5'
13984 5' -53.7 NC_003521.1 + 45505 0.74 0.770143
Target:  5'- uCUACaCGUcGCCGUCGAGCCGCa--- -3'
miRNA:   3'- cGAUG-GCAaUGGCAGCUUGGCGgcag -5'
13984 5' -53.7 NC_003521.1 + 46449 0.67 0.986976
Target:  5'- gGCUGCgGggGCUgGUCGGcCuCGUCGUCg -3'
miRNA:   3'- -CGAUGgCaaUGG-CAGCUuG-GCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 47934 0.78 0.536007
Target:  5'- cGCUGCUG--AUCGUC-AACCGCCGUCg -3'
miRNA:   3'- -CGAUGGCaaUGGCAGcUUGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 47996 0.68 0.963543
Target:  5'- --cGCCGUga-CGUUguugGAACCGCCGUUc -3'
miRNA:   3'- cgaUGGCAaugGCAG----CUUGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 48226 0.67 0.985375
Target:  5'- --gACCGUU-CCGUCGA--CGCCGa- -3'
miRNA:   3'- cgaUGGCAAuGGCAGCUugGCGGCag -5'
13984 5' -53.7 NC_003521.1 + 48528 0.68 0.974785
Target:  5'- cGCUACCGcggacggUGCCGaCGAacggcguggagacGCCGCUGg- -3'
miRNA:   3'- -CGAUGGCa------AUGGCaGCU-------------UGGCGGCag -5'
13984 5' -53.7 NC_003521.1 + 49817 0.66 0.993057
Target:  5'- gGCUgggcGCCGUgcagugcGCCGUgCaGACgGCCGUCc -3'
miRNA:   3'- -CGA----UGGCAa------UGGCA-GcUUGgCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 53319 0.68 0.972449
Target:  5'- aGgaGCCGUc-UCGUCGGAUCGUCGUg -3'
miRNA:   3'- -CgaUGGCAauGGCAGCUUGGCGGCAg -5'
13984 5' -53.7 NC_003521.1 + 53438 0.72 0.85446
Target:  5'- uGCggagGCUGUUGCCGcugCucACCGUCGUCg -3'
miRNA:   3'- -CGa---UGGCAAUGGCa--GcuUGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 53535 0.7 0.930532
Target:  5'- uGCUGuCCGcu-CCGggUCGAgguGCCGCUGUCg -3'
miRNA:   3'- -CGAU-GGCaauGGC--AGCU---UGGCGGCAG- -5'
13984 5' -53.7 NC_003521.1 + 53973 0.68 0.975035
Target:  5'- uGCUGCaCGccGCCGcUGGGCCGCCa-- -3'
miRNA:   3'- -CGAUG-GCaaUGGCaGCUUGGCGGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.