miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13985 3' -51.2 NC_003521.1 + 107630 0.66 0.996567
Target:  5'- --cGACCGCggUCGUCccgaUCgccGAGGCCg -3'
miRNA:   3'- aauCUGGCGuuGGCAG----AGa--CUUUGGg -5'
13985 3' -51.2 NC_003521.1 + 192999 0.66 0.996567
Target:  5'- cUGGACUGCAAaaccCCGUa-CUGGAACUg -3'
miRNA:   3'- aAUCUGGCGUU----GGCAgaGACUUUGGg -5'
13985 3' -51.2 NC_003521.1 + 73726 0.66 0.996567
Target:  5'- -cGGGCCGCGACCG-CUUcgUGcAGCUg -3'
miRNA:   3'- aaUCUGGCGUUGGCaGAG--ACuUUGGg -5'
13985 3' -51.2 NC_003521.1 + 109603 0.66 0.996567
Target:  5'- ----gUCGCGacGCUGUCUCUGGcgccGGCCCc -3'
miRNA:   3'- aaucuGGCGU--UGGCAGAGACU----UUGGG- -5'
13985 3' -51.2 NC_003521.1 + 88148 0.66 0.996567
Target:  5'- -aAGACCG-AAgCGaagCUGAAGCCCa -3'
miRNA:   3'- aaUCUGGCgUUgGCagaGACUUUGGG- -5'
13985 3' -51.2 NC_003521.1 + 148913 0.66 0.996567
Target:  5'- ---cGCCGCcGCCGUC-CUG-GAUCCg -3'
miRNA:   3'- aaucUGGCGuUGGCAGaGACuUUGGG- -5'
13985 3' -51.2 NC_003521.1 + 148164 0.66 0.996567
Target:  5'- -gAGGCUGCucGACCGgggggaUGGGACCCu -3'
miRNA:   3'- aaUCUGGCG--UUGGCagag--ACUUUGGG- -5'
13985 3' -51.2 NC_003521.1 + 38074 0.66 0.996567
Target:  5'- -gGGGuuGUgguGGCCGUCgCUGGcaaGACCCg -3'
miRNA:   3'- aaUCUggCG---UUGGCAGaGACU---UUGGG- -5'
13985 3' -51.2 NC_003521.1 + 71992 0.66 0.996567
Target:  5'- --uGACgCGCAGCUcg--CUGggGCCCa -3'
miRNA:   3'- aauCUG-GCGUUGGcagaGACuuUGGG- -5'
13985 3' -51.2 NC_003521.1 + 102450 0.66 0.996512
Target:  5'- -cAGGCCGCGgcagaucucgaagACCGUgUgCUuagaGAGGCCCg -3'
miRNA:   3'- aaUCUGGCGU-------------UGGCAgA-GA----CUUUGGG- -5'
13985 3' -51.2 NC_003521.1 + 239856 0.67 0.995984
Target:  5'- -cAGACCGcCGGCC-UCUCguugcGCCCa -3'
miRNA:   3'- aaUCUGGC-GUUGGcAGAGacuu-UGGG- -5'
13985 3' -51.2 NC_003521.1 + 234387 0.67 0.995984
Target:  5'- --cGGCCGUcauGACCGUCaaUGAGcguCCCg -3'
miRNA:   3'- aauCUGGCG---UUGGCAGagACUUu--GGG- -5'
13985 3' -51.2 NC_003521.1 + 112042 0.67 0.995984
Target:  5'- -gAGGCCGCcACCGacagcaUC-CUGGAgaACCCc -3'
miRNA:   3'- aaUCUGGCGuUGGC------AGaGACUU--UGGG- -5'
13985 3' -51.2 NC_003521.1 + 128016 0.67 0.995984
Target:  5'- -gGGGUCGCGGCCGUCcCaGAGcgcguGCCCg -3'
miRNA:   3'- aaUCUGGCGUUGGCAGaGaCUU-----UGGG- -5'
13985 3' -51.2 NC_003521.1 + 44408 0.67 0.995984
Target:  5'- --cGACaGCGACUGUCUgUGccgcuGCCCg -3'
miRNA:   3'- aauCUGgCGUUGGCAGAgACuu---UGGG- -5'
13985 3' -51.2 NC_003521.1 + 37453 0.67 0.995984
Target:  5'- --cGACCGCGGCgGUUUCUgcgGAGGCg- -3'
miRNA:   3'- aauCUGGCGUUGgCAGAGA---CUUUGgg -5'
13985 3' -51.2 NC_003521.1 + 39629 0.67 0.995984
Target:  5'- -cAGACCGcCGGCC-UCUCguugcGCCCa -3'
miRNA:   3'- aaUCUGGC-GUUGGcAGAGacuu-UGGG- -5'
13985 3' -51.2 NC_003521.1 + 108969 0.67 0.995984
Target:  5'- --uGGCCGUGGCCGcCU-UGAAccaGCCCa -3'
miRNA:   3'- aauCUGGCGUUGGCaGAgACUU---UGGG- -5'
13985 3' -51.2 NC_003521.1 + 180279 0.67 0.995984
Target:  5'- gUAGGCgCGCAcguugagcagcACCGUCUCccaGAugCCg -3'
miRNA:   3'- aAUCUG-GCGU-----------UGGCAGAGac-UUugGG- -5'
13985 3' -51.2 NC_003521.1 + 136405 0.67 0.995921
Target:  5'- -cGGGCCGCGugugaggcagacaGCCGUCcgCgagGuAGCCCu -3'
miRNA:   3'- aaUCUGGCGU-------------UGGCAGa-Ga--CuUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.