miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13985 3' -51.2 NC_003521.1 + 96714 0.67 0.995597
Target:  5'- -cAGGCCGCGGCgGUCcagCagccgcaugaggcaGAAGCCCa -3'
miRNA:   3'- aaUCUGGCGUUGgCAGa--Ga-------------CUUUGGG- -5'
13985 3' -51.2 NC_003521.1 + 91174 0.67 0.995322
Target:  5'- -cAGGgCGCAugCGcCUCUGGAAgCg -3'
miRNA:   3'- aaUCUgGCGUugGCaGAGACUUUgGg -5'
13985 3' -51.2 NC_003521.1 + 219031 0.67 0.995322
Target:  5'- -aAGACuuCGUAACCcUCUCUGAAcgaACCg -3'
miRNA:   3'- aaUCUG--GCGUUGGcAGAGACUU---UGGg -5'
13985 3' -51.2 NC_003521.1 + 10112 0.67 0.994575
Target:  5'- -gAGGCCuuuuuGCuaucuuugAGCCGUCUCUGAAAgUCu -3'
miRNA:   3'- aaUCUGG-----CG--------UUGGCAGAGACUUUgGG- -5'
13985 3' -51.2 NC_003521.1 + 164758 0.67 0.994575
Target:  5'- ---uGCCGCAcaucGCCGUCaucaagcgUCUGGcGGCCCg -3'
miRNA:   3'- aaucUGGCGU----UGGCAG--------AGACU-UUGGG- -5'
13985 3' -51.2 NC_003521.1 + 179411 0.67 0.994575
Target:  5'- -aGGuGCCGCAuGCUGUCgCUGAGcaguuugucgGCCCg -3'
miRNA:   3'- aaUC-UGGCGU-UGGCAGaGACUU----------UGGG- -5'
13985 3' -51.2 NC_003521.1 + 185135 0.67 0.994575
Target:  5'- -gGGAUgCGCAACUGccaguuccUCUCggUGggGCCCg -3'
miRNA:   3'- aaUCUG-GCGUUGGC--------AGAG--ACuuUGGG- -5'
13985 3' -51.2 NC_003521.1 + 131408 0.67 0.993734
Target:  5'- cUGGACCGCAucGCCGUCaacgcCUucAACaCCa -3'
miRNA:   3'- aAUCUGGCGU--UGGCAGa----GAcuUUG-GG- -5'
13985 3' -51.2 NC_003521.1 + 123905 0.67 0.993734
Target:  5'- -cAGGCCGUAGCUGUCggagCgaaagGGGucuCCCg -3'
miRNA:   3'- aaUCUGGCGUUGGCAGa---Ga----CUUu--GGG- -5'
13985 3' -51.2 NC_003521.1 + 207156 0.67 0.993734
Target:  5'- -cGGGCCaCGGCCgGUCgCUGGAuCCCg -3'
miRNA:   3'- aaUCUGGcGUUGG-CAGaGACUUuGGG- -5'
13985 3' -51.2 NC_003521.1 + 8093 0.67 0.992791
Target:  5'- -gGGAUCGCAGCgG-CUCgGAGucgucuGCCCa -3'
miRNA:   3'- aaUCUGGCGUUGgCaGAGaCUU------UGGG- -5'
13985 3' -51.2 NC_003521.1 + 7393 0.67 0.992791
Target:  5'- -gGGACCGCGucgagGCCGUC---GGAGCCa -3'
miRNA:   3'- aaUCUGGCGU-----UGGCAGagaCUUUGGg -5'
13985 3' -51.2 NC_003521.1 + 111115 0.67 0.992791
Target:  5'- -cGGGCCGCGGCCGg--CaGAAgcgggcguccucGCCCg -3'
miRNA:   3'- aaUCUGGCGUUGGCagaGaCUU------------UGGG- -5'
13985 3' -51.2 NC_003521.1 + 123984 0.67 0.992791
Target:  5'- -cGGuCgGCGGCCGUCaggUCUGGAaaccgcugcagcACCCa -3'
miRNA:   3'- aaUCuGgCGUUGGCAG---AGACUU------------UGGG- -5'
13985 3' -51.2 NC_003521.1 + 148960 0.67 0.992791
Target:  5'- ---cGCCGCcGCCGUC-CUGGuccgccGCCCu -3'
miRNA:   3'- aaucUGGCGuUGGCAGaGACUu-----UGGG- -5'
13985 3' -51.2 NC_003521.1 + 29463 0.67 0.992791
Target:  5'- --uGAuCCGCGACCGgCUgCUGcgGGACCCc -3'
miRNA:   3'- aauCU-GGCGUUGGCaGA-GAC--UUUGGG- -5'
13985 3' -51.2 NC_003521.1 + 49581 0.67 0.992791
Target:  5'- gUGGGCCGCGgcGCCGcCUCcu---CCCa -3'
miRNA:   3'- aAUCUGGCGU--UGGCaGAGacuuuGGG- -5'
13985 3' -51.2 NC_003521.1 + 121051 0.68 0.991738
Target:  5'- gUGGACCGCAGCCug----GAGGCCg -3'
miRNA:   3'- aAUCUGGCGUUGGcagagaCUUUGGg -5'
13985 3' -51.2 NC_003521.1 + 152342 0.68 0.991738
Target:  5'- -cGGGcCCGC-GCCGacgcugCUCUGggGCCg -3'
miRNA:   3'- aaUCU-GGCGuUGGCa-----GAGACuuUGGg -5'
13985 3' -51.2 NC_003521.1 + 119179 0.68 0.991738
Target:  5'- --cGGCgCGCAGCUGgaUCUGggGCCg -3'
miRNA:   3'- aauCUG-GCGUUGGCagAGACuuUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.