Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13985 | 5' | -54.9 | NC_003521.1 | + | 208849 | 0.66 | 0.943269 |
Target: 5'- aGGAGCUGUAcaUGcGGcuggACGGCACCAu -3' miRNA: 3'- aUUUCGACGUc-AC-CCa---UGCCGUGGUu -5' |
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13985 | 5' | -54.9 | NC_003521.1 | + | 155398 | 0.66 | 0.955907 |
Target: 5'- cGAGGCcgGCGG-GGGgcugGGCACCGGa -3' miRNA: 3'- aUUUCGa-CGUCaCCCaug-CCGUGGUU- -5' |
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13985 | 5' | -54.9 | NC_003521.1 | + | 213862 | 0.66 | 0.959656 |
Target: 5'- ---cGCUGCAG-GGcGUccAUGGCACCc- -3' miRNA: 3'- auuuCGACGUCaCC-CA--UGCCGUGGuu -5' |
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13985 | 5' | -54.9 | NC_003521.1 | + | 77033 | 0.66 | 0.943269 |
Target: 5'- uUGAGGCcgGCGGUGG---UGGCGCCGc -3' miRNA: 3'- -AUUUCGa-CGUCACCcauGCCGUGGUu -5' |
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13985 | 5' | -54.9 | NC_003521.1 | + | 125841 | 0.66 | 0.955907 |
Target: 5'- -cGGGCUcGCGGUGGucGUACaGCGCCu- -3' miRNA: 3'- auUUCGA-CGUCACC--CAUGcCGUGGuu -5' |
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13985 | 5' | -54.9 | NC_003521.1 | + | 160301 | 0.66 | 0.947718 |
Target: 5'- --cGGCaagGCGGUGGGcACGGcCAUCGGa -3' miRNA: 3'- auuUCGa--CGUCACCCaUGCC-GUGGUU- -5' |
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13985 | 5' | -54.9 | NC_003521.1 | + | 117362 | 0.66 | 0.95552 |
Target: 5'- cGGAGCUGacgcccagccugaCGGUGcaGGUGCGGCACg-- -3' miRNA: 3'- aUUUCGAC-------------GUCAC--CCAUGCCGUGguu -5' |
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13985 | 5' | -54.9 | NC_003521.1 | + | 123183 | 0.66 | 0.959291 |
Target: 5'- --cGGCgGCGG-GGGaccguaggccgcaUACGGCGCCGGg -3' miRNA: 3'- auuUCGaCGUCaCCC-------------AUGCCGUGGUU- -5' |
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13985 | 5' | -54.9 | NC_003521.1 | + | 59150 | 0.66 | 0.95552 |
Target: 5'- aAAAGCUGguGgaucagcUGcGGcACGGCGCCGc -3' miRNA: 3'- aUUUCGACguC-------AC-CCaUGCCGUGGUu -5' |
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13985 | 5' | -54.9 | NC_003521.1 | + | 150468 | 0.66 | 0.95552 |
Target: 5'- cUGGGGCgGCgagcgccuGGUGGGgcccuucagcuuuUACGGCGCCGg -3' miRNA: 3'- -AUUUCGaCG--------UCACCC-------------AUGCCGUGGUu -5' |
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13985 | 5' | -54.9 | NC_003521.1 | + | 237674 | 0.66 | 0.942811 |
Target: 5'- --uAGUcggGCAGUGGuaucguaGUACGGUACCGGg -3' miRNA: 3'- auuUCGa--CGUCACC-------CAUGCCGUGGUU- -5' |
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13985 | 5' | -54.9 | NC_003521.1 | + | 73132 | 0.66 | 0.947718 |
Target: 5'- ---uGCUGCAcGgcgGGGgcagcggcgGCGGCGCCGc -3' miRNA: 3'- auuuCGACGU-Ca--CCCa--------UGCCGUGGUu -5' |
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13985 | 5' | -54.9 | NC_003521.1 | + | 100165 | 0.66 | 0.947718 |
Target: 5'- uUGAGGUcGUug-GGGUAgGGCGCCAGg -3' miRNA: 3'- -AUUUCGaCGucaCCCAUgCCGUGGUU- -5' |
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13985 | 5' | -54.9 | NC_003521.1 | + | 49563 | 0.66 | 0.951929 |
Target: 5'- aAGAGCaccaccUGCcgcGUGGGccGCGGCGCCGc -3' miRNA: 3'- aUUUCG------ACGu--CACCCa-UGCCGUGGUu -5' |
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13985 | 5' | -54.9 | NC_003521.1 | + | 213926 | 0.67 | 0.923062 |
Target: 5'- gAAAGCUGC-GUGGacgGCGGuCACCu- -3' miRNA: 3'- aUUUCGACGuCACCca-UGCC-GUGGuu -5' |
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13985 | 5' | -54.9 | NC_003521.1 | + | 50506 | 0.67 | 0.911501 |
Target: 5'- --cGGCgGCGGUGGaG-AUGGUACCAAu -3' miRNA: 3'- auuUCGaCGUCACC-CaUGCCGUGGUU- -5' |
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13985 | 5' | -54.9 | NC_003521.1 | + | 7567 | 0.67 | 0.93365 |
Target: 5'- aAGAGCaGC-GUGGGUACGGUGaCGAg -3' miRNA: 3'- aUUUCGaCGuCACCCAUGCCGUgGUU- -5' |
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13985 | 5' | -54.9 | NC_003521.1 | + | 137781 | 0.67 | 0.937127 |
Target: 5'- ---uGuCUGCAGcaccugcgcaugucUGGGUACGGCuACCGu -3' miRNA: 3'- auuuC-GACGUC--------------ACCCAUGCCG-UGGUu -5' |
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13985 | 5' | -54.9 | NC_003521.1 | + | 215435 | 0.68 | 0.905359 |
Target: 5'- gUGAAGCagaGCcGcGGGUGCuGGCGCCAGg -3' miRNA: 3'- -AUUUCGa--CGuCaCCCAUG-CCGUGGUU- -5' |
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13985 | 5' | -54.9 | NC_003521.1 | + | 70254 | 0.68 | 0.905359 |
Target: 5'- -cGAGCUGguG-GGGUGCaGCACgGg -3' miRNA: 3'- auUUCGACguCaCCCAUGcCGUGgUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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