miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13985 5' -54.9 NC_003521.1 + 30987 0.72 0.698455
Target:  5'- --cAGCUGCGGaucgggaUGGGgcgacgACGGCGCCGg -3'
miRNA:   3'- auuUCGACGUC-------ACCCa-----UGCCGUGGUu -5'
13985 5' -54.9 NC_003521.1 + 237674 0.66 0.942811
Target:  5'- --uAGUcggGCAGUGGuaucguaGUACGGUACCGGg -3'
miRNA:   3'- auuUCGa--CGUCACC-------CAUGCCGUGGUU- -5'
13985 5' -54.9 NC_003521.1 + 73132 0.66 0.947718
Target:  5'- ---uGCUGCAcGgcgGGGgcagcggcgGCGGCGCCGc -3'
miRNA:   3'- auuuCGACGU-Ca--CCCa--------UGCCGUGGUu -5'
13985 5' -54.9 NC_003521.1 + 100165 0.66 0.947718
Target:  5'- uUGAGGUcGUug-GGGUAgGGCGCCAGg -3'
miRNA:   3'- -AUUUCGaCGucaCCCAUgCCGUGGUU- -5'
13985 5' -54.9 NC_003521.1 + 49563 0.66 0.951929
Target:  5'- aAGAGCaccaccUGCcgcGUGGGccGCGGCGCCGc -3'
miRNA:   3'- aUUUCG------ACGu--CACCCa-UGCCGUGGUu -5'
13985 5' -54.9 NC_003521.1 + 150468 0.66 0.95552
Target:  5'- cUGGGGCgGCgagcgccuGGUGGGgcccuucagcuuuUACGGCGCCGg -3'
miRNA:   3'- -AUUUCGaCG--------UCACCC-------------AUGCCGUGGUu -5'
13985 5' -54.9 NC_003521.1 + 59150 0.66 0.95552
Target:  5'- aAAAGCUGguGgaucagcUGcGGcACGGCGCCGc -3'
miRNA:   3'- aUUUCGACguC-------AC-CCaUGCCGUGGUu -5'
13985 5' -54.9 NC_003521.1 + 125841 0.66 0.955907
Target:  5'- -cGGGCUcGCGGUGGucGUACaGCGCCu- -3'
miRNA:   3'- auUUCGA-CGUCACC--CAUGcCGUGGuu -5'
13985 5' -54.9 NC_003521.1 + 213862 0.66 0.959656
Target:  5'- ---cGCUGCAG-GGcGUccAUGGCACCc- -3'
miRNA:   3'- auuuCGACGUCaCC-CA--UGCCGUGGuu -5'
13985 5' -54.9 NC_003521.1 + 215435 0.68 0.905359
Target:  5'- gUGAAGCagaGCcGcGGGUGCuGGCGCCAGg -3'
miRNA:   3'- -AUUUCGa--CGuCaCCCAUG-CCGUGGUU- -5'
13985 5' -54.9 NC_003521.1 + 70254 0.68 0.905359
Target:  5'- -cGAGCUGguG-GGGUGCaGCACgGg -3'
miRNA:   3'- auUUCGACguCaCCCAUGcCGUGgUu -5'
13985 5' -54.9 NC_003521.1 + 73746 0.68 0.905359
Target:  5'- --cAGCUGCucuucuacauGUGGGc-CGGCACCGg -3'
miRNA:   3'- auuUCGACGu---------CACCCauGCCGUGGUu -5'
13985 5' -54.9 NC_003521.1 + 63893 0.71 0.749251
Target:  5'- gGGAGCUGCAGca-GUugGGCACCc- -3'
miRNA:   3'- aUUUCGACGUCaccCAugCCGUGGuu -5'
13985 5' -54.9 NC_003521.1 + 88061 0.71 0.768497
Target:  5'- aUGAGGUcGCGGUGGucgGCGGCGCCc- -3'
miRNA:   3'- -AUUUCGaCGUCACCca-UGCCGUGGuu -5'
13985 5' -54.9 NC_003521.1 + 141982 0.71 0.777939
Target:  5'- aGGAGCUGCAGcGGGaGCuGGCccgcGCCAAg -3'
miRNA:   3'- aUUUCGACGUCaCCCaUG-CCG----UGGUU- -5'
13985 5' -54.9 NC_003521.1 + 13272 0.69 0.847953
Target:  5'- --uAGCUGUauGGUGGGUgACGGCgucuucauaGCCAGa -3'
miRNA:   3'- auuUCGACG--UCACCCA-UGCCG---------UGGUU- -5'
13985 5' -54.9 NC_003521.1 + 63958 0.69 0.86362
Target:  5'- gUGGAGCUGCu---GGcGCGGCGCCAu -3'
miRNA:   3'- -AUUUCGACGucacCCaUGCCGUGGUu -5'
13985 5' -54.9 NC_003521.1 + 137294 0.68 0.885514
Target:  5'- cUGGAGCUGCGG-GuGGcGCGGCugCu- -3'
miRNA:   3'- -AUUUCGACGUCaC-CCaUGCCGugGuu -5'
13985 5' -54.9 NC_003521.1 + 128632 0.68 0.885514
Target:  5'- cGAAGUUGCcGUaGGUGgcCGGCGCCGAc -3'
miRNA:   3'- aUUUCGACGuCAcCCAU--GCCGUGGUU- -5'
13985 5' -54.9 NC_003521.1 + 226887 0.68 0.892362
Target:  5'- --cAGCUGCGG-GGGcaccACGGCgGCCAGc -3'
miRNA:   3'- auuUCGACGUCaCCCa---UGCCG-UGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.