miRNA display CGI


Results 21 - 40 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13985 5' -54.9 NC_003521.1 + 50506 0.67 0.911501
Target:  5'- --cGGCgGCGGUGGaG-AUGGUACCAAu -3'
miRNA:   3'- auuUCGaCGUCACC-CaUGCCGUGGUU- -5'
13985 5' -54.9 NC_003521.1 + 213926 0.67 0.923062
Target:  5'- gAAAGCUGC-GUGGacgGCGGuCACCu- -3'
miRNA:   3'- aUUUCGACGuCACCca-UGCC-GUGGuu -5'
13985 5' -54.9 NC_003521.1 + 7567 0.67 0.93365
Target:  5'- aAGAGCaGC-GUGGGUACGGUGaCGAg -3'
miRNA:   3'- aUUUCGaCGuCACCCAUGCCGUgGUU- -5'
13985 5' -54.9 NC_003521.1 + 137781 0.67 0.937127
Target:  5'- ---uGuCUGCAGcaccugcgcaugucUGGGUACGGCuACCGu -3'
miRNA:   3'- auuuC-GACGUC--------------ACCCAUGCCG-UGGUu -5'
13985 5' -54.9 NC_003521.1 + 77033 0.66 0.943269
Target:  5'- uUGAGGCcgGCGGUGG---UGGCGCCGc -3'
miRNA:   3'- -AUUUCGa-CGUCACCcauGCCGUGGUu -5'
13985 5' -54.9 NC_003521.1 + 208849 0.66 0.943269
Target:  5'- aGGAGCUGUAcaUGcGGcuggACGGCACCAu -3'
miRNA:   3'- aUUUCGACGUc-AC-CCa---UGCCGUGGUu -5'
13985 5' -54.9 NC_003521.1 + 160301 0.66 0.947718
Target:  5'- --cGGCaagGCGGUGGGcACGGcCAUCGGa -3'
miRNA:   3'- auuUCGa--CGUCACCCaUGCC-GUGGUU- -5'
13985 5' -54.9 NC_003521.1 + 117362 0.66 0.95552
Target:  5'- cGGAGCUGacgcccagccugaCGGUGcaGGUGCGGCACg-- -3'
miRNA:   3'- aUUUCGAC-------------GUCAC--CCAUGCCGUGguu -5'
13985 5' -54.9 NC_003521.1 + 155398 0.66 0.955907
Target:  5'- cGAGGCcgGCGG-GGGgcugGGCACCGGa -3'
miRNA:   3'- aUUUCGa-CGUCaCCCaug-CCGUGGUU- -5'
13985 5' -54.9 NC_003521.1 + 123183 0.66 0.959291
Target:  5'- --cGGCgGCGG-GGGaccguaggccgcaUACGGCGCCGGg -3'
miRNA:   3'- auuUCGaCGUCaCCC-------------AUGCCGUGGUU- -5'
13985 5' -54.9 NC_003521.1 + 44075 0.68 0.905359
Target:  5'- cGGGGCaGCAGacGGUGCaGGCGCCGc -3'
miRNA:   3'- aUUUCGaCGUCacCCAUG-CCGUGGUu -5'
13985 5' -54.9 NC_003521.1 + 186778 0.68 0.878437
Target:  5'- gGAGGCgGCGGUGGugGCGGCGgCGGg -3'
miRNA:   3'- aUUUCGaCGUCACCcaUGCCGUgGUU- -5'
13985 5' -54.9 NC_003521.1 + 122719 0.69 0.855889
Target:  5'- gGAGGCggucgugGUcGUGGGcgACGGCGCCGc -3'
miRNA:   3'- aUUUCGa------CGuCACCCa-UGCCGUGGUu -5'
13985 5' -54.9 NC_003521.1 + 14582 0.69 0.855889
Target:  5'- gUGAAGCUGCAcacgccGGGcUACGGCACgGu -3'
miRNA:   3'- -AUUUCGACGUca----CCC-AUGCCGUGgUu -5'
13985 5' -54.9 NC_003521.1 + 187601 0.7 0.805433
Target:  5'- ---uGCUGcCGGUGGGcACGGCcuGCCGGg -3'
miRNA:   3'- auuuCGAC-GUCACCCaUGCCG--UGGUU- -5'
13985 5' -54.9 NC_003521.1 + 60231 0.7 0.787249
Target:  5'- gGAAGCUGCGGUcucGaGGcugACGGCGCUAu -3'
miRNA:   3'- aUUUCGACGUCA---C-CCa--UGCCGUGGUu -5'
13985 5' -54.9 NC_003521.1 + 93210 0.71 0.777939
Target:  5'- gUGAAGgUGCAGUucGGGUACcaccugGGCACCu- -3'
miRNA:   3'- -AUUUCgACGUCA--CCCAUG------CCGUGGuu -5'
13985 5' -54.9 NC_003521.1 + 198936 0.71 0.729586
Target:  5'- aUGGGGUugaugagGCAGUGgaGGUugGGCACCAGg -3'
miRNA:   3'- -AUUUCGa------CGUCAC--CCAugCCGUGGUU- -5'
13985 5' -54.9 NC_003521.1 + 114103 0.72 0.689303
Target:  5'- --cGGCUGCuGUGcGGUgACGGCGCCc- -3'
miRNA:   3'- auuUCGACGuCAC-CCA-UGCCGUGGuu -5'
13985 5' -54.9 NC_003521.1 + 126312 0.73 0.668834
Target:  5'- --uGGCgGCGGUGGGcACGGCgGCCAc -3'
miRNA:   3'- auuUCGaCGUCACCCaUGCCG-UGGUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.