miRNA display CGI


Results 41 - 60 of 127 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13987 5' -56.7 NC_003521.1 + 138019 0.67 0.914583
Target:  5'- aCUUGcugcCGCCCGAGCUggCGGCcgCCGGCGc -3'
miRNA:   3'- -GAGCc---GCGGGUUUGA--GCCGa-GGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 47631 0.67 0.914583
Target:  5'- --aGGCgGCCguGACggCGGCUCUGGCGg -3'
miRNA:   3'- gagCCG-CGGguUUGa-GCCGAGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 53455 0.67 0.914583
Target:  5'- gCUCGGCGgCCAGGg-CGucCUCCAGCGa -3'
miRNA:   3'- -GAGCCGCgGGUUUgaGCc-GAGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 77735 0.67 0.908809
Target:  5'- -cUGGCGCCCGAGgaCGGg-CCGGCc -3'
miRNA:   3'- gaGCCGCGGGUUUgaGCCgaGGUUGu -5'
13987 5' -56.7 NC_003521.1 + 61587 0.67 0.908809
Target:  5'- uUCaGGCGCCagaAGGCccgCGGCgggaCCAACAa -3'
miRNA:   3'- gAG-CCGCGGg--UUUGa--GCCGa---GGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 236591 0.67 0.908809
Target:  5'- -aCGGCaGCCagc-CUCggGGCUCCGACAc -3'
miRNA:   3'- gaGCCG-CGGguuuGAG--CCGAGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 223587 0.67 0.902813
Target:  5'- -aCGGCGCgCCuccacCUCGGcCUCCGAg- -3'
miRNA:   3'- gaGCCGCG-GGuuu--GAGCC-GAGGUUgu -5'
13987 5' -56.7 NC_003521.1 + 76020 0.67 0.902813
Target:  5'- aCUCGGuCGCCCAccGACggCaGCUCCucggAGCGg -3'
miRNA:   3'- -GAGCC-GCGGGU--UUGa-GcCGAGG----UUGU- -5'
13987 5' -56.7 NC_003521.1 + 40499 0.67 0.902813
Target:  5'- -aCGGCGCCgCAGcgcauCUCGaacucCUCCAGCAg -3'
miRNA:   3'- gaGCCGCGG-GUUu----GAGCc----GAGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 174737 0.67 0.896598
Target:  5'- --gGGCgGCCCAAcgcagggcucGCUCGGCUgCCAcguACGg -3'
miRNA:   3'- gagCCG-CGGGUU----------UGAGCCGA-GGU---UGU- -5'
13987 5' -56.7 NC_003521.1 + 191916 0.67 0.896598
Target:  5'- gUCGGCGCCgAAGagaCGGUguacaCCAGCGa -3'
miRNA:   3'- gAGCCGCGGgUUUga-GCCGa----GGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 173146 0.67 0.896598
Target:  5'- cCUCGGCGUacUUggGCuUCaGCUCCAGCc -3'
miRNA:   3'- -GAGCCGCG--GGuuUG-AGcCGAGGUUGu -5'
13987 5' -56.7 NC_003521.1 + 129117 0.67 0.896598
Target:  5'- -cCGGCGCaCGGACuggacgUCGGCgUCCGACu -3'
miRNA:   3'- gaGCCGCGgGUUUG------AGCCG-AGGUUGu -5'
13987 5' -56.7 NC_003521.1 + 153614 0.67 0.896598
Target:  5'- gUUGGCGCUCAgcAGCUCcuGCgCCAGCGg -3'
miRNA:   3'- gAGCCGCGGGU--UUGAGc-CGaGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 103773 0.68 0.892765
Target:  5'- --aGGUGCUUGAACUCGcgcacucgccgccguGCUCCGGCGa -3'
miRNA:   3'- gagCCGCGGGUUUGAGC---------------CGAGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 195140 0.68 0.890167
Target:  5'- -aCGGUGUCC--GCUCGGUgUCCGGCc -3'
miRNA:   3'- gaGCCGCGGGuuUGAGCCG-AGGUUGu -5'
13987 5' -56.7 NC_003521.1 + 204139 0.68 0.890167
Target:  5'- --aGGCGCCgGAGCcCGGCcUCAGCu -3'
miRNA:   3'- gagCCGCGGgUUUGaGCCGaGGUUGu -5'
13987 5' -56.7 NC_003521.1 + 111090 0.68 0.890167
Target:  5'- -aCGGCGCggaCGcGCUCGGCgUCGACGg -3'
miRNA:   3'- gaGCCGCGg--GUuUGAGCCGaGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 196064 0.68 0.886205
Target:  5'- -cCGGcCGCCUuccgcgguccguCUCGGCgUCCAGCAg -3'
miRNA:   3'- gaGCC-GCGGGuuu---------GAGCCG-AGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 234580 0.68 0.883522
Target:  5'- uCUCGGCGUCCGcgggAGCgcCGGuCUCCAu-- -3'
miRNA:   3'- -GAGCCGCGGGU----UUGa-GCC-GAGGUugu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.