miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13987 5' -56.7 NC_003521.1 + 224746 0.66 0.940102
Target:  5'- --aGGCGgCCAGcGCgucggGGCUCCGGCAg -3'
miRNA:   3'- gagCCGCgGGUU-UGag---CCGAGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 88079 0.66 0.939189
Target:  5'- -gCGGCGCCCGugaccacgggccACUCGGCgaagUUCAugGa -3'
miRNA:   3'- gaGCCGCGGGUu-----------UGAGCCG----AGGUugU- -5'
13987 5' -56.7 NC_003521.1 + 192355 0.66 0.937335
Target:  5'- gCUCGGUGCUCGcACgggCGGCguugggggacgcgacUUCAGCAg -3'
miRNA:   3'- -GAGCCGCGGGUuUGa--GCCG---------------AGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 227610 0.66 0.935446
Target:  5'- uUgGGCGCCgG---UCGGCccUCCAACAc -3'
miRNA:   3'- gAgCCGCGGgUuugAGCCG--AGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 70714 0.66 0.935446
Target:  5'- gUCGGCGCCUgcGC-CGGauguaCCGGCAc -3'
miRNA:   3'- gAGCCGCGGGuuUGaGCCga---GGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 141946 0.66 0.935446
Target:  5'- -aCGGCGCCCccuAGCacgagCGGCgguagcaguaCCAACAc -3'
miRNA:   3'- gaGCCGCGGGu--UUGa----GCCGa---------GGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 122938 0.66 0.930567
Target:  5'- uUCcGCGCCCGGccguGCUCGGCcucgCCGGgGa -3'
miRNA:   3'- gAGcCGCGGGUU----UGAGCCGa---GGUUgU- -5'
13987 5' -56.7 NC_003521.1 + 223389 0.66 0.930567
Target:  5'- -gCGGCGCCCcGACgcgggccgugUGGCgccCCGGCGc -3'
miRNA:   3'- gaGCCGCGGGuUUGa---------GCCGa--GGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 142245 0.66 0.930067
Target:  5'- gCUCGcGgGCCCGcuccuccucggccGACUCGGgCUCgGGCu -3'
miRNA:   3'- -GAGC-CgCGGGU-------------UUGAGCC-GAGgUUGu -5'
13987 5' -56.7 NC_003521.1 + 154078 0.67 0.925463
Target:  5'- uCUCGGUGCCCAGcCUCcucauGUUCC-GCGu -3'
miRNA:   3'- -GAGCCGCGGGUUuGAGc----CGAGGuUGU- -5'
13987 5' -56.7 NC_003521.1 + 177590 0.67 0.925463
Target:  5'- -gCGGCGCC---GC-CGGUUCCGGCc -3'
miRNA:   3'- gaGCCGCGGguuUGaGCCGAGGUUGu -5'
13987 5' -56.7 NC_003521.1 + 168815 0.67 0.925463
Target:  5'- -gCGGCGCauCCugAAGCUgGGCcCCAGCGa -3'
miRNA:   3'- gaGCCGCG--GG--UUUGAgCCGaGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 43481 0.67 0.925463
Target:  5'- -gCGGCGgCCGuGCUggccgCGGCggCCAACAu -3'
miRNA:   3'- gaGCCGCgGGUuUGA-----GCCGa-GGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 39046 0.67 0.925463
Target:  5'- -gUGGCGCCgAGGCgaaCGGCucguaguuuUCCAGCu -3'
miRNA:   3'- gaGCCGCGGgUUUGa--GCCG---------AGGUUGu -5'
13987 5' -56.7 NC_003521.1 + 239274 0.67 0.925463
Target:  5'- -gUGGCGCCgAGGCgaaCGGCucguaguuuUCCAGCu -3'
miRNA:   3'- gaGCCGCGGgUUUGa--GCCG---------AGGUUGu -5'
13987 5' -56.7 NC_003521.1 + 111313 0.67 0.925463
Target:  5'- gUCGGCGCUCGAGCUC--CUCCc--- -3'
miRNA:   3'- gAGCCGCGGGUUUGAGccGAGGuugu -5'
13987 5' -56.7 NC_003521.1 + 156024 0.67 0.923888
Target:  5'- aUCGaGCuGCCCGAcgugcccucccucuGCuUCGGCggugCCAACAa -3'
miRNA:   3'- gAGC-CG-CGGGUU--------------UG-AGCCGa---GGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 149282 0.67 0.923888
Target:  5'- gUCGGCGCCCAcaaguacgugcuggAGCgcgacgacgCGGCcgCCGugGu -3'
miRNA:   3'- gAGCCGCGGGU--------------UUGa--------GCCGa-GGUugU- -5'
13987 5' -56.7 NC_003521.1 + 173942 0.67 0.920135
Target:  5'- uUgGGCGUcaCCAAcuGCUCGGUgccgaacacgUCCAGCAc -3'
miRNA:   3'- gAgCCGCG--GGUU--UGAGCCG----------AGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 191338 0.67 0.920135
Target:  5'- -cUGGCGCCCAguAugUCGcaGUUCUGGCAc -3'
miRNA:   3'- gaGCCGCGGGU--UugAGC--CGAGGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.