miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13987 5' -56.7 NC_003521.1 + 239932 0.73 0.63612
Target:  5'- -aUGGUGCCCAuGGCUUGGUauUCCAGCu -3'
miRNA:   3'- gaGCCGCGGGU-UUGAGCCG--AGGUUGu -5'
13987 5' -56.7 NC_003521.1 + 175284 0.72 0.665816
Target:  5'- gUCGGUGCCCGugaacacgguCUCGGCgucgcCCAGCu -3'
miRNA:   3'- gAGCCGCGGGUuu--------GAGCCGa----GGUUGu -5'
13987 5' -56.7 NC_003521.1 + 29710 0.72 0.684517
Target:  5'- cCUCGGCGCCUggcugcuGAGcCUCGGCg-CGACGg -3'
miRNA:   3'- -GAGCCGCGGG-------UUU-GAGCCGagGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 116742 0.72 0.69528
Target:  5'- gUCGGCGCCCuucAAACacgUGGCUUguGCAg -3'
miRNA:   3'- gAGCCGCGGG---UUUGa--GCCGAGguUGU- -5'
13987 5' -56.7 NC_003521.1 + 149044 0.71 0.724298
Target:  5'- uCUCGaggccGUGCCCGcGCUgGGCUUCGACGc -3'
miRNA:   3'- -GAGC-----CGCGGGUuUGAgCCGAGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 195516 0.71 0.724298
Target:  5'- gUCGGCcaGCUCGGGCUcCGGCUCCuGGCc -3'
miRNA:   3'- gAGCCG--CGGGUUUGA-GCCGAGG-UUGu -5'
13987 5' -56.7 NC_003521.1 + 43860 0.71 0.752646
Target:  5'- --aGGCGCCCcGGC-CGGCUCCcgGGCc -3'
miRNA:   3'- gagCCGCGGGuUUGaGCCGAGG--UUGu -5'
13987 5' -56.7 NC_003521.1 + 50088 0.7 0.760986
Target:  5'- uUCGGCGUCCAgaggguuGACUUcgGGgUCCGGCGu -3'
miRNA:   3'- gAGCCGCGGGU-------UUGAG--CCgAGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 201816 0.7 0.761907
Target:  5'- -gCGGCGCCC--GCUCcGGCcUCGACAc -3'
miRNA:   3'- gaGCCGCGGGuuUGAG-CCGaGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 233410 0.7 0.761907
Target:  5'- uCUCGGCuccugGCCCcgg--UGGCUCCGACGg -3'
miRNA:   3'- -GAGCCG-----CGGGuuugaGCCGAGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 207345 0.7 0.771061
Target:  5'- -gUGGCGCCCGAGauCUgGGuCUCCAGuCAg -3'
miRNA:   3'- gaGCCGCGGGUUU--GAgCC-GAGGUU-GU- -5'
13987 5' -56.7 NC_003521.1 + 96689 0.7 0.77469
Target:  5'- cCUCGGagcccaggcgcaccuCGUCCAGGCcgCGGCggUCCAGCAg -3'
miRNA:   3'- -GAGCC---------------GCGGGUUUGa-GCCG--AGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 191019 0.7 0.78901
Target:  5'- -aCGGCGCCCAGccAUUCGGgCggCAGCGu -3'
miRNA:   3'- gaGCCGCGGGUU--UGAGCC-GagGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 205336 0.7 0.797791
Target:  5'- -aCGGCGCCUc--CUCGGCggCGGCAg -3'
miRNA:   3'- gaGCCGCGGGuuuGAGCCGagGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 82849 0.7 0.803853
Target:  5'- --aGGUGCCCAAGCcuguuguugcggguUCGGCUCUcggaaGACGg -3'
miRNA:   3'- gagCCGCGGGUUUG--------------AGCCGAGG-----UUGU- -5'
13987 5' -56.7 NC_003521.1 + 119772 0.7 0.80643
Target:  5'- gCUCGGCcUCCAGGCUgCGGUccaccuUCCGGCGc -3'
miRNA:   3'- -GAGCCGcGGGUUUGA-GCCG------AGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 16517 0.7 0.80643
Target:  5'- -gCGGCGCUC-GGCUCGGCUggAGCGc -3'
miRNA:   3'- gaGCCGCGGGuUUGAGCCGAggUUGU- -5'
13987 5' -56.7 NC_003521.1 + 123310 0.69 0.81239
Target:  5'- aCUCGGCGUCCAguuccagccguccgAACaccgaCGGCcCCAGCGc -3'
miRNA:   3'- -GAGCCGCGGGU--------------UUGa----GCCGaGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 114174 0.69 0.814921
Target:  5'- aCUCGGa-CCCGGugaUCGGCUCgGGCAu -3'
miRNA:   3'- -GAGCCgcGGGUUug-AGCCGAGgUUGU- -5'
13987 5' -56.7 NC_003521.1 + 209001 0.69 0.814921
Target:  5'- uUCGGCGCCCGGGCcgagaCGGCgCUcaAACGc -3'
miRNA:   3'- gAGCCGCGGGUUUGa----GCCGaGG--UUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.