miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13987 5' -56.7 NC_003521.1 + 141946 0.66 0.935446
Target:  5'- -aCGGCGCCCccuAGCacgagCGGCgguagcaguaCCAACAc -3'
miRNA:   3'- gaGCCGCGGGu--UUGa----GCCGa---------GGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 118160 0.66 0.940102
Target:  5'- gCUgGGCGCCuCGA--UCGcGCUCCAGg- -3'
miRNA:   3'- -GAgCCGCGG-GUUugAGC-CGAGGUUgu -5'
13987 5' -56.7 NC_003521.1 + 142245 0.66 0.930067
Target:  5'- gCUCGcGgGCCCGcuccuccucggccGACUCGGgCUCgGGCu -3'
miRNA:   3'- -GAGC-CgCGGGU-------------UUGAGCC-GAGgUUGu -5'
13987 5' -56.7 NC_003521.1 + 223389 0.66 0.930567
Target:  5'- -gCGGCGCCCcGACgcgggccgugUGGCgccCCGGCGc -3'
miRNA:   3'- gaGCCGCGGGuUUGa---------GCCGa--GGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 70714 0.66 0.935446
Target:  5'- gUCGGCGCCUgcGC-CGGauguaCCGGCAc -3'
miRNA:   3'- gAGCCGCGGGuuUGaGCCga---GGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 192355 0.66 0.937335
Target:  5'- gCUCGGUGCUCGcACgggCGGCguugggggacgcgacUUCAGCAg -3'
miRNA:   3'- -GAGCCGCGGGUuUGa--GCCG---------------AGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 88079 0.66 0.939189
Target:  5'- -gCGGCGCCCGugaccacgggccACUCGGCgaagUUCAugGa -3'
miRNA:   3'- gaGCCGCGGGUu-----------UGAGCCG----AGGUugU- -5'
13987 5' -56.7 NC_003521.1 + 224746 0.66 0.940102
Target:  5'- --aGGCGgCCAGcGCgucggGGCUCCGGCAg -3'
miRNA:   3'- gagCCGCgGGUU-UGag---CCGAGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 236550 0.66 0.948749
Target:  5'- uUCGGCGUCgCucg-UCGGCUCCGcCGu -3'
miRNA:   3'- gAGCCGCGG-GuuugAGCCGAGGUuGU- -5'
13987 5' -56.7 NC_003521.1 + 77735 0.67 0.908809
Target:  5'- -cUGGCGCCCGAGgaCGGg-CCGGCc -3'
miRNA:   3'- gaGCCGCGGGUUUgaGCCgaGGUUGu -5'
13987 5' -56.7 NC_003521.1 + 76020 0.67 0.902813
Target:  5'- aCUCGGuCGCCCAccGACggCaGCUCCucggAGCGg -3'
miRNA:   3'- -GAGCC-GCGGGU--UUGa-GcCGAGG----UUGU- -5'
13987 5' -56.7 NC_003521.1 + 138019 0.67 0.914583
Target:  5'- aCUUGcugcCGCCCGAGCUggCGGCcgCCGGCGc -3'
miRNA:   3'- -GAGCc---GCGGGUUUGA--GCCGa-GGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 191338 0.67 0.920135
Target:  5'- -cUGGCGCCCAguAugUCGcaGUUCUGGCAc -3'
miRNA:   3'- gaGCCGCGGGU--UugAGC--CGAGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 61587 0.67 0.908809
Target:  5'- uUCaGGCGCCagaAGGCccgCGGCgggaCCAACAa -3'
miRNA:   3'- gAG-CCGCGGg--UUUGa--GCCGa---GGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 129117 0.67 0.896598
Target:  5'- -cCGGCGCaCGGACuggacgUCGGCgUCCGACu -3'
miRNA:   3'- gaGCCGCGgGUUUG------AGCCG-AGGUUGu -5'
13987 5' -56.7 NC_003521.1 + 191916 0.67 0.896598
Target:  5'- gUCGGCGCCgAAGagaCGGUguacaCCAGCGa -3'
miRNA:   3'- gAGCCGCGGgUUUga-GCCGa----GGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 223587 0.67 0.902813
Target:  5'- -aCGGCGCgCCuccacCUCGGcCUCCGAg- -3'
miRNA:   3'- gaGCCGCG-GGuuu--GAGCC-GAGGUUgu -5'
13987 5' -56.7 NC_003521.1 + 53455 0.67 0.914583
Target:  5'- gCUCGGCGgCCAGGg-CGucCUCCAGCGa -3'
miRNA:   3'- -GAGCCGCgGGUUUgaGCc-GAGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 156024 0.67 0.923888
Target:  5'- aUCGaGCuGCCCGAcgugcccucccucuGCuUCGGCggugCCAACAa -3'
miRNA:   3'- gAGC-CG-CGGGUU--------------UG-AGCCGa---GGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 43481 0.67 0.925463
Target:  5'- -gCGGCGgCCGuGCUggccgCGGCggCCAACAu -3'
miRNA:   3'- gaGCCGCgGGUuUGA-----GCCGa-GGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.