miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13987 5' -56.7 NC_003521.1 + 65093 0.68 0.869611
Target:  5'- -cCGGCGCCaggaGGAagagCGGCgCCGACAg -3'
miRNA:   3'- gaGCCGCGGg---UUUga--GCCGaGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 70714 0.66 0.935446
Target:  5'- gUCGGCGCCUgcGC-CGGauguaCCGGCAc -3'
miRNA:   3'- gAGCCGCGGGuuUGaGCCga---GGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 71046 0.73 0.616296
Target:  5'- cCUCGaGCGCCCAAAgcgCGGCgCCAugGg -3'
miRNA:   3'- -GAGC-CGCGGGUUUga-GCCGaGGUugU- -5'
13987 5' -56.7 NC_003521.1 + 74189 0.74 0.567046
Target:  5'- -gCGGCGCCCGGcGCgCGGC-CCGACGc -3'
miRNA:   3'- gaGCCGCGGGUU-UGaGCCGaGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 74705 0.66 0.944536
Target:  5'- -gCGGCGCCgcGGCagCGGCUCCcuGCu -3'
miRNA:   3'- gaGCCGCGGguUUGa-GCCGAGGu-UGu -5'
13987 5' -56.7 NC_003521.1 + 75549 0.66 0.940102
Target:  5'- -gCGGCGCC--GGCggCGGCUacgCCAGCGc -3'
miRNA:   3'- gaGCCGCGGguUUGa-GCCGA---GGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 76020 0.67 0.902813
Target:  5'- aCUCGGuCGCCCAccGACggCaGCUCCucggAGCGg -3'
miRNA:   3'- -GAGCC-GCGGGU--UUGa-GcCGAGG----UUGU- -5'
13987 5' -56.7 NC_003521.1 + 77735 0.67 0.908809
Target:  5'- -cUGGCGCCCGAGgaCGGg-CCGGCc -3'
miRNA:   3'- gaGCCGCGGGUUUgaGCCgaGGUUGu -5'
13987 5' -56.7 NC_003521.1 + 82849 0.7 0.803853
Target:  5'- --aGGUGCCCAAGCcuguuguugcggguUCGGCUCUcggaaGACGg -3'
miRNA:   3'- gagCCGCGGGUUUG--------------AGCCGAGG-----UUGU- -5'
13987 5' -56.7 NC_003521.1 + 88079 0.66 0.939189
Target:  5'- -gCGGCGCCCGugaccacgggccACUCGGCgaagUUCAugGa -3'
miRNA:   3'- gaGCCGCGGGUu-----------UGAGCCG----AGGUugU- -5'
13987 5' -56.7 NC_003521.1 + 91520 0.69 0.839432
Target:  5'- -aCGGCGgCCGcgUcgUCGcGCUCCAGCAc -3'
miRNA:   3'- gaGCCGCgGGUuuG--AGC-CGAGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 96689 0.7 0.77469
Target:  5'- cCUCGGagcccaggcgcaccuCGUCCAGGCcgCGGCggUCCAGCAg -3'
miRNA:   3'- -GAGCC---------------GCGGGUUUGa-GCCG--AGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 98385 0.68 0.876669
Target:  5'- -gUGGCGCCCGA----GGCUUCGGCGg -3'
miRNA:   3'- gaGCCGCGGGUUugagCCGAGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 99962 0.68 0.869611
Target:  5'- -gCGGCGCCUcgGC-CGagaccgcgaagcGCUCCAGCAc -3'
miRNA:   3'- gaGCCGCGGGuuUGaGC------------CGAGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 101505 0.73 0.606397
Target:  5'- -gCGGCGgCCAGACgCGGCcgaCCAGCAg -3'
miRNA:   3'- gaGCCGCgGGUUUGaGCCGa--GGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 102798 0.66 0.948749
Target:  5'- -cCGGCGgCCGccAGCUCGgGCggCAGCAa -3'
miRNA:   3'- gaGCCGCgGGU--UUGAGC-CGagGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 102959 0.68 0.8549
Target:  5'- --aGGCGCUCGGGCgucggGGCUCUGGCGg -3'
miRNA:   3'- gagCCGCGGGUUUGag---CCGAGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 103459 0.66 0.948749
Target:  5'- uUC-GCGUCCGcggauGCgggagggCGGCUCCAGCGg -3'
miRNA:   3'- gAGcCGCGGGUu----UGa------GCCGAGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 103773 0.68 0.892765
Target:  5'- --aGGUGCUUGAACUCGcgcacucgccgccguGCUCCGGCGa -3'
miRNA:   3'- gagCCGCGGGUUUGAGC---------------CGAGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 103851 0.69 0.83143
Target:  5'- uCUCGGCcucGUCCAGGCU-GGCgaucagcgCCGACAg -3'
miRNA:   3'- -GAGCCG---CGGGUUUGAgCCGa-------GGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.